Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,760,205 – 3,760,322 |
Length | 117 |
Max. P | 0.639106 |
Location | 3,760,205 – 3,760,322 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 91.38 |
Mean single sequence MFE | -39.23 |
Consensus MFE | -30.38 |
Energy contribution | -30.38 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.74 |
Structure conservation index | 0.77 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3760205 117 + 22224390 CAAGAAGAUGUUGCAGCCGCCUGGCUUUCUGGAGGUUAAGUGCCAGCCCCGAAUGAAACUAGGUUCUUGCGGUUGGCUAAGGACCUGUAACUAAGGUCAAUGCAAGUGCAGCAUAAC .......((((((((...((.(((((((.((.(((((....(((((((.(((..(((......)))))).)))))))....))))).))...)))))))..))...))))))))... ( -39.20) >DroSec_CAF1 13743 115 + 1 CAAGAAGAUGUUGCAGCCGUC--GCUUUCUGGAGGUUAAGUGCCAGCCCUGAAUGAAUCUGGGUUCUUGCGGUUGGCUAAGGACCUUUAACUAAGGUCAAUGCAAGUGCAGCAUUAC ......(((((((((((....--(((((.((((((((....((((((((.....((((....))))..).)))))))....))))))))...)))))....))...))))))))).. ( -38.10) >DroEre_CAF1 14622 115 + 1 CAAGAAGAUGUUGCAGCCGCC--GCCUGCUGGAGGUUAAGUGCCAGCCCUGAAUGAAACUAGGUUGUUGCGGUUAGCUAAGGACCUGUAUCUGAGGGCAAUGCAAGUGCAGCAUUAC ......(((((((((...(((--.((....)).)))....(((..(((((.(..((.((.(((((.((((.....)).)).))))))).))).)))))...)))..))))))))).. ( -39.70) >DroYak_CAF1 14037 115 + 1 CAAGAAGAUGUUGCAGCCGCC--GCUUUCUGGAGGUUAAGUAGCAGCCCUGAAUGAAACUAGGUUGUUGCGGUUAGCUAGGGACCUGUAUCUAAGGUCAAUGCGAGUGCAGCAUUAC ......(((((((((..(((.--....(((((.......(((((((((..(.......)..)))))))))......)))))(((((.......)))))...)))..))))))))).. ( -39.92) >consensus CAAGAAGAUGUUGCAGCCGCC__GCUUUCUGGAGGUUAAGUGCCAGCCCUGAAUGAAACUAGGUUCUUGCGGUUAGCUAAGGACCUGUAACUAAGGUCAAUGCAAGUGCAGCAUUAC ......((((((((((((((...((((((.((.((((.......))))))....))....))))....)))))).((....(((((.......)))))...))....)))))))).. (-30.38 = -30.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:17 2006