Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,751,732 – 3,751,823 |
Length | 91 |
Max. P | 0.695002 |
Location | 3,751,732 – 3,751,823 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 94.14 |
Mean single sequence MFE | -35.33 |
Consensus MFE | -34.09 |
Energy contribution | -33.77 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.11 |
Mean z-score | -1.59 |
Structure conservation index | 0.96 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3751732 91 + 22224390 AUCGUAGUGCAGCUGCUGCUGCAUCUGCUGUUGUUCCAUGGCCUGGUUAUAGCCGUAUGCAGAUGCCGAGGUGCUCGGCCCCUGGUUGUAA ...((((((((((....)))))).)))).........(..(((.(((....)))......((..((((((...))))))..)))))..).. ( -32.30) >DroSim_CAF1 5529 91 + 1 AUCGUAGUGCAGCUGCUGCUGCAUCUGCUGUUGCUCCAUGGCCUGGUUAUAGCCGUAGGCAGAUGCCGAGGUGCUCGGCCCCUGGUUGUAA ...((((((((((....)))))).))))..((((.(((.((((.(((....(((...(((....)))..)))))).))))..)))..)))) ( -37.80) >DroEre_CAF1 5631 91 + 1 AUCGUAGUGCAGCUGCUGUUGCAUCUGCUGAUGCUCCAUGGUCUGGUUAUAGCCGUAGGCAGCUGCCGAGGUGCUGGGCCCCUGGUUGUAG ...((((((((((....)))))).))))...(((.(((.((((..((....(((...(((....)))..)))))..))))..)))..))). ( -35.90) >consensus AUCGUAGUGCAGCUGCUGCUGCAUCUGCUGUUGCUCCAUGGCCUGGUUAUAGCCGUAGGCAGAUGCCGAGGUGCUCGGCCCCUGGUUGUAA ...((((((((((....)))))).))))...(((.(((.((((..((....(((...(((....)))..)))))..))))..)))..))). (-34.09 = -33.77 + -0.33)
Location | 3,751,732 – 3,751,823 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 94.14 |
Mean single sequence MFE | -31.47 |
Consensus MFE | -25.07 |
Energy contribution | -25.40 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.42 |
Structure conservation index | 0.80 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3751732 91 - 22224390 UUACAACCAGGGGCCGAGCACCUCGGCAUCUGCAUACGGCUAUAACCAGGCCAUGGAACAACAGCAGAUGCAGCAGCAGCUGCACUACGAU ............((((((...))))))((((((....((((.......)))).((......))))))))(((((....)))))........ ( -32.20) >DroSim_CAF1 5529 91 - 1 UUACAACCAGGGGCCGAGCACCUCGGCAUCUGCCUACGGCUAUAACCAGGCCAUGGAGCAACAGCAGAUGCAGCAGCAGCUGCACUACGAU .......(((..((((((...))))))..))).(((.((((.......)))).))).((....))((.((((((....))))))))..... ( -31.40) >DroEre_CAF1 5631 91 - 1 CUACAACCAGGGGCCCAGCACCUCGGCAGCUGCCUACGGCUAUAACCAGACCAUGGAGCAUCAGCAGAUGCAACAGCAGCUGCACUACGAU .........((((.......)))).(((((((((((.((((......)).)).))).(((((....)))))....))))))))........ ( -30.80) >consensus UUACAACCAGGGGCCGAGCACCUCGGCAUCUGCCUACGGCUAUAACCAGGCCAUGGAGCAACAGCAGAUGCAGCAGCAGCUGCACUACGAU ......(((.((((((((...))))))....((.....))..........)).))).......((((.(((....))).))))........ (-25.07 = -25.40 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:15 2006