Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 517,794 – 517,902 |
Length | 108 |
Max. P | 0.946534 |
Location | 517,794 – 517,902 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.23 |
Mean single sequence MFE | -21.08 |
Consensus MFE | -17.29 |
Energy contribution | -17.73 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -2.20 |
Structure conservation index | 0.82 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 517794 108 + 22224390 UACUUCUCACUCC--------CACCUCCAAACUCUUUAGUUUGUAAUUCUAUUUAUAUGCACUCGCUCCAGAGUAUCCC----UAUGUACUCGGAUCUUGGGUAAGCAUGUACUUCUUUU .............--------......((((((....))))))..........((((((((((((.(((.((((((...----...)))))))))...)))))..)))))))........ ( -22.10) >DroSec_CAF1 4088 108 + 1 UAGUUCCUACUCC--------CACCUCCAAACUCUUUAGUUUGUAAUUCUAUUUAUAUGCACUCGCUCCAGAGUAUCCC----UAUGUACUCGGAUCUUGGGUAAGCAUGUACUUCUUAU .............--------......((((((....))))))..........((((((((((((.(((.((((((...----...)))))))))...)))))..)))))))........ ( -22.10) >DroSim_CAF1 4105 108 + 1 UAGUUCCUACUCC--------CACCUCCAAACUCUUUAGUUUGUAAUUCUAUUUAUAUGCACUCGCUCCAGAGUAUCCC----UAUGUACUCGGAUCUUGGGUAAGCAUGUACUUCUUAU .............--------......((((((....))))))..........((((((((((((.(((.((((((...----...)))))))))...)))))..)))))))........ ( -22.10) >DroEre_CAF1 3982 120 + 1 UACUUUCUUCUUCCACCUUUCCACCUCCAAACUCUUUGGCUUGUAAUUCUAUUUAUAUGCACUCGCGUCGGAGUAUCUACACCCAUGUACUCGGAUCUUUAGUGGGCAUGCACUUCUGUU ...................(((((..............((.(((((......))))).))......(((.((((((..........)))))).))).....))))).............. ( -18.00) >consensus UACUUCCUACUCC________CACCUCCAAACUCUUUAGUUUGUAAUUCUAUUUAUAUGCACUCGCUCCAGAGUAUCCC____UAUGUACUCGGAUCUUGGGUAAGCAUGUACUUCUUAU ...........................((((((....))))))..........((((((((((((.(((.((((((..........)))))))))...)))))..)))))))........ (-17.29 = -17.73 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:58 2006