Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,750,407 – 3,750,522 |
Length | 115 |
Max. P | 0.735209 |
Location | 3,750,407 – 3,750,522 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.70 |
Mean single sequence MFE | -28.44 |
Consensus MFE | -21.86 |
Energy contribution | -21.78 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.73 |
Structure conservation index | 0.77 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.735209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3750407 115 + 22224390 UUUUAAGUUAAAUGCAAUUGUGUCUGAAGCUCUCACAAGCCAUUUGCUAGUGAAUUGUGAAUGGAAUAAAGCGUGAAGCAUUUGAAAAGCCAU-UUGGCAUUAAAACCAGCACA---AU ................((((((.(((..(((.((((...(((((..(.........)..)))))........))))))).........(((..-..)))........)))))))---)) ( -27.70) >DroSec_CAF1 4130 115 + 1 UUUAAAGCUAAAUGCAAUUGUGUCUGAAGCUCUCACAAGCCAUUUGCUAGUGAAUUGUGAAUGGAAUAAAGCGUGAAGCAUUUGAAAAGCCAU-UUGGCAUUAAAACCAGCACA---AA ......((.....))..(((((.(((..(((.((((...(((((..(.........)..)))))........))))))).........(((..-..)))........)))))))---). ( -29.10) >DroSim_CAF1 4154 115 + 1 UUUAAAGCUAAAUGCAAUUGUGUCUGAAGCUCUCACAAGCCAUUUGCUAGUAAAUAGUGAAUGGAAUAAAGCGUGAAGCAUUUGAAAAGCCAU-UUGGCAUUAAAACCAGCACA---GU ......((.....)).((((((.(((..(((.((((...(((((..(((.....)))..)))))........))))))).........(((..-..)))........)))))))---)) ( -32.70) >DroEre_CAF1 4058 114 + 1 UUUUAAGCCAAAUGCAAUUGUGUCUGAAGCUCUCACAAGCCAUUUGCUAGUGAAUUGUGAGUGGGUUAAAGCGUGAAGCAUUUGAAAGGCCAU-UUGGCAUUAA-GCCUGCAGU---GC ......(((((((((..(..(((...((.(((((((((..((((....))))..))))))).)).))...)))..).)))))))....(((..-..))).....-....))...---.. ( -31.10) >DroYak_CAF1 4217 118 + 1 UCCUAAGCUAAAUGCAAUUGUGUCUGAAGCUCUCACAAGCCAUUAGCUAGUGAAUUGUGAAUGGAAUAAAGCGUGAAACAUUUGAAAUGGCAUUUUGGCAUUAA-ACCUGCAAUUCUGC ......(((((((((..(..((..(....((.((((((..((((....))))..))))))..))....)..))..)..(((.....)))))).)))))).....-....(((....))) ( -21.60) >consensus UUUUAAGCUAAAUGCAAUUGUGUCUGAAGCUCUCACAAGCCAUUUGCUAGUGAAUUGUGAAUGGAAUAAAGCGUGAAGCAUUUGAAAAGCCAU_UUGGCAUUAAAACCAGCACA___GC ......(((((((((..(((((...(.....).))))).(((((..(.........)..))))).............)))))))....(((.....)))..........))........ (-21.86 = -21.78 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:12 2006