Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,750,018 – 3,750,123 |
Length | 105 |
Max. P | 0.533933 |
Location | 3,750,018 – 3,750,123 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 88.63 |
Mean single sequence MFE | -29.81 |
Consensus MFE | -21.26 |
Energy contribution | -22.57 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.12 |
Mean z-score | -1.52 |
Structure conservation index | 0.71 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533933 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3750018 105 - 22224390 GCUGUGCGCCCUAAUUGGGCUAAUUACGCUAAAAGCCAGCGAGUCUGGGGCAAUUUUC-AAUCAGUUUUCAUCAAGCUCGCUGCUAAGUUGCCUAAUUAUGAGCUG (((....((((.....))))((((((.((....(((.((((((..(((((.((((...-....)))).)).)))..))))))))).....)).))))))..))).. ( -31.90) >DroSec_CAF1 3728 105 - 1 GCUGUGCGUCCUAAUUGGGCUAAUUACACUAAAAGCCAGCGGGUCUGGGGCAAUUUUC-AAUCAGUUUUCAUCAAGCUCGCUGCUAAGUAGCCUAAUUAUGAGCUG .....((.((.(((((((((((...........(((.((((((..(((((.((((...-....)))).)).)))..)))))))))...))))))))))).)))).. ( -30.74) >DroSim_CAF1 3751 105 - 1 GCUGUGCGCCCUAAUUGGGCUAAUUACACUAAAAGCCAGCGGGUCUGGGGCAAUUUUC-AAUCAGUUUUCAUCAAGCUCGCUGCUAAGUAGCCUAAUUAUGAGCUG (((....((((.....))))((((((..(((..(((.((((((..(((((.((((...-....)))).)).)))..)))))))))...)))..))))))..))).. ( -30.80) >DroEre_CAF1 3683 102 - 1 GCUGUCCGCCUUAAUUGGACUAAUUACACUAAAAGCUAGCGGGUCUGGCACAAUUUAAGUAUCAGUU-UCUUCAAGCUAGC---UGAGUAGCCAAAUUACAAGCUG ((((((((.......)))))(((((...(((..(((((((.((.(((..((.......))..)))..-.))....))))))---)...)))...)))))..))).. ( -25.80) >consensus GCUGUGCGCCCUAAUUGGGCUAAUUACACUAAAAGCCAGCGGGUCUGGGGCAAUUUUC_AAUCAGUUUUCAUCAAGCUCGCUGCUAAGUAGCCUAAUUAUGAGCUG (((....((((.....))))((((((..(((..(((.((((((..(((((.((((........)))).)).)))..)))))))))...)))..))))))..))).. (-21.26 = -22.57 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:11 2006