Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,745,013 – 3,745,130 |
Length | 117 |
Max. P | 0.993076 |
Location | 3,745,013 – 3,745,130 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 74.43 |
Mean single sequence MFE | -39.53 |
Consensus MFE | -23.96 |
Energy contribution | -25.47 |
Covariance contribution | 1.51 |
Combinations/Pair | 1.11 |
Mean z-score | -2.30 |
Structure conservation index | 0.61 |
SVM decision value | 2.37 |
SVM RNA-class probability | 0.993076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3745013 117 - 22224390 UACUUUCCUGUGCAAUACGGGCUACGAUUGCUCACUGUUCGUCUCACUGGCAUUUGAAGCUGGACAAGGCCCAAAGGGCCGAAAAGUGGCAUUGCCAUGGUCGUUUGUGCAGGAUUG- ..(..(((((..(((.((((.(..((((.((.((((.(((((((....(((.......)))))))..(((((...)))))))).))))))))))....).)))))))..)))))..)- ( -45.20) >DroSec_CAF1 17883 116 - 1 UACUUUCCUGUGCAAUACGGGCUCCGAUUGGUCUCUGUUCGCCUCGCUGGCAUUUGCAGCUGGACAAGGC-CAAAGGGCCGAAAAGUGGCAUUGCCAUGGUCGUUUGUGCAGGAUUG- ..(..(((((..(((.((.(((.((..(((((((.((((((....((((.(....)))))))))))))))-))).)))))((...(((((...)))))..)))))))..)))))..)- ( -49.00) >DroYak_CAF1 18486 90 - 1 UACUUUCAUGCUC-----------------GUCUCUGUUCGCCACUCUGGCAUUUGCAGCUGGACAAGGC-CAAAG-GCCAAAAAGUGGCAUUGUU---------UAUGCAGGAAUUU ((((((.......-----------------((((((((..(((.....)))....))))..))))..(((-(...)-)))..))))))((((....---------.))))........ ( -24.40) >consensus UACUUUCCUGUGCAAUACGGGCU_CGAUUGGUCUCUGUUCGCCUCACUGGCAUUUGCAGCUGGACAAGGC_CAAAGGGCCGAAAAGUGGCAUUGCCAUGGUCGUUUGUGCAGGAUUG_ .....((((((((((.((((.(............((....((((..(..((.......))..)...))))....)).((((.....))))........).)))))))))))))).... (-23.96 = -25.47 + 1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:07 2006