Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,743,267 – 3,743,362 |
Length | 95 |
Max. P | 0.996928 |
Location | 3,743,267 – 3,743,362 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 90.38 |
Mean single sequence MFE | -25.06 |
Consensus MFE | -22.68 |
Energy contribution | -22.12 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -2.09 |
Structure conservation index | 0.90 |
SVM decision value | 2.77 |
SVM RNA-class probability | 0.996928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3743267 95 - 22224390 ACUCCAAGUUCACUGUCUGCGUCCUU-UUCCACGUUUCAUGGCUGGGCUAAAAAACAAAAACAAAAAACAAGUCAAUGUGGACAGAGAAAGGGGAG .((((...(((.(((((..(((((..-..(((.......)))..))))............((.........))....)..))))).)))...)))) ( -24.30) >DroSec_CAF1 16861 88 - 1 ACUCCAAGUUCACUGUCUGCGUCCUUUUUCCACGUUUCAUGGCUGGGCUAAAAAA--------AAAAACAAGUCAAUGUGGACAGAGAAAGGGGAG .((((...(((.(((((..(((........((.(((....)))))((((......--------.......)))).)))..))))).)))...)))) ( -23.72) >DroSim_CAF1 17903 87 - 1 ACUCCAAGUUCACUGUCUGCGUCCUUUUUCCACGUUUCAUGGCUGGGCUAAAAA---------AAAAACAAGUCAAUGUGGACAGAGAAAGGGGAG .((((...(((.(((((..(((........((.(((....)))))((((.....---------.......)))).)))..))))).)))...)))) ( -23.80) >DroEre_CAF1 16637 84 - 1 ACUCCAAGUUCACUGUCUGCGUCCUU-UUCCACGUUUCAUGGCUGGGCUAAAAA-----------AACCAAGUCAAAGUAGAUAGAGGAAGGGGAG .((((...(((.((((((((((....-....))......(((((((........-----------..)).)))))..)))))))).)))...)))) ( -25.00) >DroYak_CAF1 16801 83 - 1 ACUCCAAGUUCACUGUCUGCGUCCUU-UUCCACGUUUCAUGGCUGGGCUAAAAA-----------AA-CAAGUCCAAGUAGACAGAGAAAGGGGAG .((((...(((.((((((((......-..(((.......))).((((((.....-----------..-..)))))).)))))))).)))...)))) ( -28.50) >consensus ACUCCAAGUUCACUGUCUGCGUCCUU_UUCCACGUUUCAUGGCUGGGCUAAAAA_________AAAAACAAGUCAAUGUGGACAGAGAAAGGGGAG .((((...(((.((((((((.........(((.(((....))))))(((.....................)))....)))))))).)))...)))) (-22.68 = -22.12 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:02 2006