Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 515,831 – 516,187 |
Length | 356 |
Max. P | 0.993733 |
Location | 515,831 – 515,933 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 92.00 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -23.40 |
Energy contribution | -22.96 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.92 |
Structure conservation index | 0.85 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 515831 102 + 22224390 GGGGGCUGUGUUCUUGAGUCAAAGACUGAGGUGAAAGGCAGGCAACGCAAAGAAAAGAAAAGAAAGCACGGCGGAGCCAAAAAAUUGUAAAGCGGCCUGAGC ..(((((((...(((.((((...)))).))).........(((..(((......................)))..))).............))))))).... ( -24.85) >DroSec_CAF1 2002 96 + 1 GG-GGCUGUGCUCUUGAGUCAAAGACUGAGGUGAAAGGCAGCCAAGGCAAAGAA-----AAGAACGCACGGCGGAGCCAAAAAAUUGUAAAGCGGCCCGAGC .(-((((((.(.(((.((((...)))).))).)...(((.(((...((......-----......))..)))...))).............))))))).... ( -30.00) >DroSim_CAF1 1996 96 + 1 GG-GGCUGUGCUCUUGAGUCAAAGACUGAGGUGAAAGGCAGGCAAGGCAAAGAA-----AGGAACGCACGGCGGAGCCAAAAAAUUGUAAAGCGGCCCGAGC .(-((((((.(.(((.((((...)))).))).)...(((..((...((......-----......))...))...))).............))))))).... ( -27.40) >consensus GG_GGCUGUGCUCUUGAGUCAAAGACUGAGGUGAAAGGCAGGCAAGGCAAAGAA_____AAGAACGCACGGCGGAGCCAAAAAAUUGUAAAGCGGCCCGAGC ....(((((((.(((.((((...)))).)))......((.......)).................)))))))((.(((...............))))).... (-23.40 = -22.96 + -0.44)
Location | 515,933 – 516,034 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -36.50 |
Consensus MFE | -32.79 |
Energy contribution | -33.23 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.56 |
Structure conservation index | 0.90 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 515933 101 - 22224390 GGGGUGAGUCGGUGGGUCCAAGGAAAUGCACACUAAUUACUCCUUGGCACUGCCAAGUUGGCUGGGGGAGUGGAAGGUCCUUUCUUCUUUUCCGCUCCUCU .((.(((.(.((..(..((((((((((........)))..)))))))..)..)).).))).))((((((((((((((..........)))))))))))))) ( -38.10) >DroSec_CAF1 2098 95 - 1 GGG------CGCUGUGUCCAAGGAAAUGCACACUAAUUACUCCUUGGCACUGCCAAGUUGGCUGGGGGUGUGGAAAGUCCUUUCUUCUUUUCCGCUCCUCU .((------((..(((.((((((((((........)))..)))))))))))))).........(((((.((((((((..........)))))))).))))) ( -33.30) >DroSim_CAF1 2092 95 - 1 GGG------CUCUGUGUCCAAGGAAAUGCACACUAAUUACUCCUUGGCACUGCCAAGUUGGCUGGGGGAGUGGAAAGUCCUUUCUUCUUUUCCGCUCCUCU .((------(...(((.((((((((((........)))..)))))))))).))).........((((((((((((((..........)))))))))))))) ( -38.10) >consensus GGG______CGCUGUGUCCAAGGAAAUGCACACUAAUUACUCCUUGGCACUGCCAAGUUGGCUGGGGGAGUGGAAAGUCCUUUCUUCUUUUCCGCUCCUCU .............(((.((((((((((........)))..)))))))))).(((.....))).((((((((((((((..........)))))))))))))) (-32.79 = -33.23 + 0.45)
Location | 516,034 – 516,154 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.82 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -25.99 |
Energy contribution | -27.68 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.03 |
Mean z-score | -2.43 |
Structure conservation index | 0.81 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 516034 120 + 22224390 CCCCCCACCCACCCUAUCCCCUUGCUGCGUGUGUUUGUGCAACAUUUGCUUUUCCACUUCGUUUGCGACAAUCAAAUGUAACAAAGGAGCGAAAAAAGGUUGCACAAAAAAGUGGGAAAA ...(((((.(((.(............).)))..((((((((((.(((((((((......((((((.......))))))......))))))))).....))))))))))...))))).... ( -32.50) >DroSec_CAF1 2193 114 + 1 CCUCCCACC------AUCCCCUUGCUGCGUGUGUUUGUGCAACAUUUGCUUUUCCACUUCGUUUGCGACAAUCAAAUGUAACAAAGGAGCGAAAAAAGGUUGCACAAAAAAGUGGGAAAA ..(((((((------(..(.(.....).)..))((((((((((.(((((((((......((((((.......))))))......))))))))).....))))))))))...))))))... ( -33.30) >DroSim_CAF1 2187 114 + 1 CCUCCCACC------AUCCCCUUGCUGCGUGUGUUUGUGCAACAUUUGCUUUUCCACUUCGUUUGCGACAAUCAAAUGUAACAAAGGAGCGAAAAAAGGUUGCACAAAAAAGUGGGAAAA ..(((((((------(..(.(.....).)..))((((((((((.(((((((((......((((((.......))))))......))))))))).....))))))))))...))))))... ( -33.30) >DroEre_CAF1 1988 98 + 1 ---------------------UUGCUGCGUGUGUUUGUGCAACAUUUGCUUUUCCACUUCGUUUGCGACAAUCAAAUGUAACAAAGGAGCGAAAAAAGGUUGCACAAAAAGU-GCGGAAA ---------------------...((((((...((((((((((.(((((((((......((((((.......))))))......))))))))).....))))))))))..))-))))... ( -30.10) >DroYak_CAF1 2032 113 + 1 CCCCCCACC------CCCCCCUUGCUGCGUGUGUUUGUGCAACAUUUGCUUUUCCACUUCGUUUGCGACAAUCAAAUGUAACAAAGGAGCGAAAAAAGGGUGCACAAAAAAG-CGGGGAA ..((((...------...(((((....(((.(.(((((...(((((((.((.((((.......)).)).)).))))))).))))).).)))....))))).((........)-))))).. ( -31.80) >consensus CCCCCCACC______AUCCCCUUGCUGCGUGUGUUUGUGCAACAUUUGCUUUUCCACUUCGUUUGCGACAAUCAAAUGUAACAAAGGAGCGAAAAAAGGUUGCACAAAAAAGUGGGAAAA ..((((((...............((.....)).((((((((((.(((((((((......((((((.......))))))......))))))))).....))))))))))...))))))... (-25.99 = -27.68 + 1.69)
Location | 516,034 – 516,154 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.82 |
Mean single sequence MFE | -37.24 |
Consensus MFE | -29.23 |
Energy contribution | -31.28 |
Covariance contribution | 2.05 |
Combinations/Pair | 1.08 |
Mean z-score | -2.94 |
Structure conservation index | 0.78 |
SVM decision value | 2.42 |
SVM RNA-class probability | 0.993733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 516034 120 - 22224390 UUUUCCCACUUUUUUGUGCAACCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUUGCACAAACACACGCAGCAAGGGGAUAGGGUGGGUGGGGGG .(..((((((..((((((((((.(((((((((((.(((((.(((......))).))))).).)))))))))).....))))))))))..(((.(............).)))))))))..) ( -40.80) >DroSec_CAF1 2193 114 - 1 UUUUCCCACUUUUUUGUGCAACCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUUGCACAAACACACGCAGCAAGGGGAU------GGUGGGAGG ..(((((((...((((((((((.(((((((((((.(((((.(((......))).))))).).)))))))))).....))))))))))((..(.(.....).)..)------)))))))). ( -39.20) >DroSim_CAF1 2187 114 - 1 UUUUCCCACUUUUUUGUGCAACCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUUGCACAAACACACGCAGCAAGGGGAU------GGUGGGAGG ..(((((((...((((((((((.(((((((((((.(((((.(((......))).))))).).)))))))))).....))))))))))((..(.(.....).)..)------)))))))). ( -39.20) >DroEre_CAF1 1988 98 - 1 UUUCCGC-ACUUUUUGUGCAACCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUUGCACAAACACACGCAGCAA--------------------- .....((-....((((((((((.(((((((((((.(((((.(((......))).))))).).)))))))))).....)))))))))).....)).....--------------------- ( -28.20) >DroYak_CAF1 2032 113 - 1 UUCCCCG-CUUUUUUGUGCACCCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUUGCACAAACACACGCAGCAAGGGGGG------GGUGGGGGG .((((((-(((((.......((((((((((((((.(((((.(((......))).))))).).))))))))).....((((((..........)))))))))))))------)))))))). ( -38.81) >consensus UUUUCCCACUUUUUUGUGCAACCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUUGCACAAACACACGCAGCAAGGGGAU______GGUGGGAGG ..((((((((..((((((((((.(((((((((((.(((((.(((......))).))))).).)))))))))).....))))))))))....(.(.....).).........)))))))). (-29.23 = -31.28 + 2.05)
Location | 516,074 – 516,187 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.16 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -17.83 |
Energy contribution | -17.83 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.73 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772327 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 516074 113 - 22224390 -------UCCUCUUCCUUGCACUUCCCCAUCUCAGCUUUGUUUUCCCACUUUUUUGUGCAACCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUU -------..........................(((((((((((.((((((((((((((((.(.......((......)).......).))).)))))).))))))).)))))))).))) ( -23.14) >DroSec_CAF1 2227 120 - 1 CGCUGUAUCCUCUUCCUUGCACUUCCCCAUCUCAGCUUUGUUUUCCCACUUUUUUGUGCAACCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUU .((((...........................))))((((((((.((((((((((((((((.(.......((......)).......).))).)))))).))))))).)))))))).... ( -25.17) >DroSim_CAF1 2221 120 - 1 CGCUGUAUCCUCUUCCUUGCACUUCCCCAUCUCAGCUUUGUUUUCCCACUUUUUUGUGCAACCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUU .((((...........................))))((((((((.((((((((((((((((.(.......((......)).......).))).)))))).))))))).)))))))).... ( -25.17) >DroEre_CAF1 2007 119 - 1 CGCCUUAUCCUGUUCCCUGCACUUCCCCAUCUGGGCUUUGUUUCCGC-ACUUUUUGUGCAACCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUU .................(((.....(((....)))..........((-((.....)))).....((((((((((.(((((.(((......))).))))).).))))))))))))...... ( -26.60) >DroYak_CAF1 2066 119 - 1 CGCCUUAUCCUGCUCCCCGCACCUCCCCGCCUCGCCUUUGUUCCCCG-CUUUUUUGUGCACCCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUU .((.......(((.....))).......))...((.(((((.....(-(........)).....((((((((((.(((((.(((......))).))))).).)))))))))))))).)). ( -21.24) >consensus CGCCGUAUCCUCUUCCUUGCACUUCCCCAUCUCAGCUUUGUUUUCCCACUUUUUUGUGCAACCUUUUUUCGCUCCUUUGUUACAUUUGAUUGUCGCAAACGAAGUGGAAAAGCAAAUGUU ..................((((.................................))))....(((((((((((.(((((.(((......))).))))).).))))))))))........ (-17.83 = -17.83 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:57 2006