Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,730,602 – 3,730,702 |
Length | 100 |
Max. P | 0.791123 |
Location | 3,730,602 – 3,730,702 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.03 |
Mean single sequence MFE | -28.80 |
Consensus MFE | -20.71 |
Energy contribution | -21.13 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.14 |
Mean z-score | -2.04 |
Structure conservation index | 0.72 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.791123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3730602 100 - 22224390 ACCAUGUCGAGAGACCUAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAGCGGUGAAAUUU--------CUGUUCGCCAUGGGCGUGGGUAGCCCCACCAAAAG ....(((..(((((.((..(((........)))..)).)))))...)))(((...((((((....--------...))))))...)))(((((....)))))...... ( -28.80) >DroPse_CAF1 9651 100 - 1 ACCAUGUCGA--GACCCAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAACGGAGAAAUUUUUUUUUGUUUGUUUGCCAUCUGCGUGGGCC----UCGAUCA-- .....(((((--(.(((((((....(((((((.......)))))))(((((.(((((((((....))))))))).).)))).....))))))).)----)))))..-- ( -32.50) >DroSec_CAF1 4389 100 - 1 ACCAUGUCGAGAGACCUAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAACCAGCGGUGAAAUUU--------CUGUUCGCCAUGGGCGUGGGUAGUCCCCCACCACU .(((((.(((((((.....(((...(((((((.......)))))))((.....)))))......)--------)).)))).)))))(.(((((......))))))... ( -27.80) >DroEre_CAF1 4330 90 - 1 ACCAUGUCGAGAGACCUAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAGCGGUGAAAUUU--------CUGUUCGCCAUGGGCGUGGGUAGAA---------- .............(((((((((...(((((((.......)))))))((.....))((((((....--------...))))))...)))))))))....---------- ( -26.30) >DroYak_CAF1 4623 90 - 1 ACCAUGUCGAGAGACCUAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAGCGGUGAAAUUU--------CUGUUCGCCAUGGGCGUGGGUAGUC---------- .............(((((((((...(((((((.......)))))))((.....))((((((....--------...))))))...)))))))))....---------- ( -26.30) >DroPer_CAF1 10225 93 - 1 ACCAUGUCGA--GACCCAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAACGGAGAAAUUUU-------UUGUUUGCCAUCUGCGUGGGCC----UCGAUCA-- .....(((((--(.(((((((....(((((((.......)))))))((((.(((..((....))..-------))).)))).....))))))).)----)))))..-- ( -31.10) >consensus ACCAUGUCGAGAGACCUAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAGCGGUGAAAUUU________CUGUUCGCCAUGGGCGUGGGUAG_C__C_A_CA__ .............(((((((((........((((..(((....)))..))))...((((((...............))))))...))))))))).............. (-20.71 = -21.13 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:58 2006