Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,719,998 – 3,720,110 |
Length | 112 |
Max. P | 0.591777 |
Location | 3,719,998 – 3,720,110 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 82.21 |
Mean single sequence MFE | -30.92 |
Consensus MFE | -18.10 |
Energy contribution | -19.44 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.14 |
Mean z-score | -1.94 |
Structure conservation index | 0.59 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591777 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3719998 112 + 22224390 UACUCA-------UUUUUCAAUUAGCUUGUUGAAAAUUACGGAGUAUCAGCGACUCCGAUUGGUCUACGGCUUUUAUGGAGCCCAAUCGAGUGGAUUGAGUGGAGAUCCGUCUGGAGAU (((((.-------.((((((((......)))))))).....)))))((((((.(((((.(..(((((((((((.....)))))(....).))))))..).)))))...)).)))).... ( -36.30) >DroSec_CAF1 11572 109 + 1 UACUCA-------UUUUUCAUUUGGCUUGUUGGAAAUUACGGAGUAUCAGCGACUACGAUUGGUCUACGCCUUUUAUGGAGACCAAUCGAGUGGAUUG---GAAGAUCUGUCUGGAGAU ..(((.-------.((((((..........))))))..(((((...(((((.(((.((((((((((...((......))))))))))))))).).)))---)....)))))...))).. ( -31.60) >DroSim_CAF1 11597 109 + 1 UACUCA-------UUUUUCAAUUAGCUUGUUGGAAAUUACGGAGUAUCAGCGACUACGAUUGGUCUACGCUUUUUAUGGAGACCAAUCGAGUGGAUUG---GAAGAUCUGUCUGGAGAU ..(((.-------.((((((((......))))))))..(((((...(((((.(((.((((((((((.((.......)).))))))))))))).).)))---)....)))))...))).. ( -33.00) >DroEre_CAF1 11669 103 + 1 UACUCA-------UUUUUCAAUUAGCCAGUUGGAAAUGACGGAGUAUCAGCGACUCCCAUUGGUCUACCCCUUUUAUGAAGCUCAAUCGAGUGUAC---------CUCCGUCUGGAGAU ..(((.-------.(((((((((....))))))))).((((((((((....((((......))))...............((((....))))))).---------)))))))..))).. ( -26.30) >DroYak_CAF1 11304 109 + 1 CCCUCACUCAUUUUUUUUCAAUUAGCUUGUUGGAAAUUUCGGAGUAUCAGUGACUCCGAU-AGUCUACGCCCUUUAUGGAGCUCAAUCGAGUGUAC---------CUUCGUCUGAAGAU ....(((((.....((((((((......))))))))..(((((((.......))))))).-.......((((.....)).))......)))))...---------((((....)))).. ( -27.40) >consensus UACUCA_______UUUUUCAAUUAGCUUGUUGGAAAUUACGGAGUAUCAGCGACUCCGAUUGGUCUACGCCUUUUAUGGAGCCCAAUCGAGUGGAUUG___G_AGAUCCGUCUGGAGAU (((((.........((((((((......)))))))).....)))))(((((.(((.(((((((.((.((.......)).)).))))))))))(((((.......)))))).)))).... (-18.10 = -19.44 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:57 2006