Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,709,449 – 3,709,566 |
Length | 117 |
Max. P | 0.555991 |
Location | 3,709,449 – 3,709,566 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 77.49 |
Mean single sequence MFE | -46.63 |
Consensus MFE | -29.83 |
Energy contribution | -28.72 |
Covariance contribution | -1.11 |
Combinations/Pair | 1.41 |
Mean z-score | -1.26 |
Structure conservation index | 0.64 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3709449 117 + 22224390 AU-GGGUGUGGCUCUGUAGGCAGCCUGCUCCAUUUUCAUCUCAAGACCCGCUGAGAGGAAAAAUCCUAAGGCUGCCAGAAGAAGGCCUAAGGUGAGCUUCUGCAGUGGUCGCCUUAUU ((-(((.((((((((((.((((((((......(((((.(((((........))))).)))))......))))))))(((((...(((...)))...))))))))).))))))))))). ( -47.00) >DroPse_CAF1 1189 118 + 1 GUUGGGCAAUGCGCCACUGGCGGCCUGUUCCAUCUUCAUUUCAAGGGCAGCGGACAUGAAGAAGCCCAGGGCGGCCAGCAGCAGGCCGACAGUGAGCUUCUGGAGUGGCCGCCGCAGG .((((((.....)))...(((((((...((((..(((((.((..........)).)))))(((((.((..((((((.......))))).)..)).)))))))))..))))))).))). ( -48.10) >DroEre_CAF1 1049 117 + 1 GU-AGGCGUGCCUGUGUAGGCGGCCUGCUCCAUCUUCAUCUCAAGACCCGCUGAGAGGAAGAAUCCCAAGGCAGCCAGAAGAAGGCCUAUGGUGAGCUUCUGCAGAGGUCUCCUUAUU ..-(((.(.((((.(((.(((.((((......(((((.(((((........))))).)))))......)))).)))(((((...(((...)))...)))))))).))))).))).... ( -42.70) >DroYak_CAF1 1049 117 + 1 GU-AGGCGUGGCUCUGUACGCGGCCUGCUCCAUCUUCAUUUCAAGACCCGCUGAGAGAAAGAAUCCCAAGGCAGCCAGAAGAAGGCCUAUGGUAAGCUUCUGCAGAGGUCUCCUUAUU ((-(((.(.(((((((...((.((((......((((..(((((........)))))..))))......)))).))((((((...(((...)))...)))))))))).))).)))))). ( -35.30) >DroAna_CAF1 1166 117 + 1 AC-AGGGGCAGUGGCGAAGGCCGCCUGCUCCAUCUUCAUCUCCAGGGCGGCGGAGAAGAAGAAGCCCAGGGCGGCCAGCAGCAGGCCGAUGGUGAGCUUCUGCAGCGGUCGCCGGAUG ..-.(((((((((((....)))).))))))).(((((.(((((........))))).)))))...((..(((((((.((((.((((((....)).))))))))...)))))))))... ( -58.60) >DroPer_CAF1 1189 118 + 1 GUUGGGCAAUGCGCCACUGGCGGCCUGUUCCAUCUUCAUUUCAAGGGCAGCGGACAUGAAGAAGCCCAGGGCGGCCAGCAGCAGGCCGACAGUGAGCUUCUGGAGUGGCCGCCGCAGG .((((((.....)))...(((((((...((((..(((((.((..........)).)))))(((((.((..((((((.......))))).)..)).)))))))))..))))))).))). ( -48.10) >consensus GU_AGGCGUGGCGCCGUAGGCGGCCUGCUCCAUCUUCAUCUCAAGACCCGCGGAGAGGAAGAAGCCCAAGGCGGCCAGAAGAAGGCCGAUGGUGAGCUUCUGCAGUGGUCGCCGUAUG ..................(((.((((......(((((.(((((........))))).)))))......)))).))).((.((.(((((.(((.......)))...))))))).))... (-29.83 = -28.72 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:52 2006