Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,702,196 – 3,702,315 |
Length | 119 |
Max. P | 0.999297 |
Location | 3,702,196 – 3,702,315 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.66 |
Mean single sequence MFE | -35.03 |
Consensus MFE | -22.84 |
Energy contribution | -26.34 |
Covariance contribution | 3.50 |
Combinations/Pair | 1.08 |
Mean z-score | -3.18 |
Structure conservation index | 0.65 |
SVM decision value | 3.49 |
SVM RNA-class probability | 0.999297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3702196 119 + 22224390 UACCUACACAUAUACUUGCCCAGGAAUCGUGCUAAAGCUUAGCGAUGCAGCGG-CACCACCGAAUGGGAUUGCAGUGAAGUCCAGCCGCUGCAACGCUUACGAACUGCACAGUGCCACCC ......(((.....(((....)))....((((........((((.((((((((-(..((.....))(((((.......))))).))))))))).))))........)))).)))...... ( -39.19) >DroSec_CAF1 35719 119 + 1 UACCUACACAUAUACUUGCCCAGGAAUCGUGCUAAAGCUUACCGAUGCAGCGG-UACCACCGAAUGGGAUUACAGUAUAGUCCAGCCGCUGCAUCGCUUACAAACUGCACAGUGCCACCC ......(((.....(((....)))....((((..........(((((((((((-(..((.....))((((((.....)))))).))))))))))))..........)))).)))...... ( -36.05) >DroEre_CAF1 40659 97 + 1 UACCUACACAUAUACUUGCCCAGGCAUUGUGCUAAUUCUUAGCGAG--------UAC---------------GAGUAAAAUCCAACCGCUACAUCGUUUACAAGCUGCACAGUGCCAGCC ......................((((((((((........((((((--------(((---------------(.((........)))).))).)))))........)))))))))).... ( -27.29) >DroYak_CAF1 36299 120 + 1 UAUCUACACAUAUACUUGCCCAGAAAUUGUGCUUAUUCUUAGCGAUGCAGCGGUUACCACCGAUUGGGACCAUAGUAAAAUCCCACCGCUGCAUCGUUUACCAACUGCACAGUGCCACCC ......................(..(((((((........((((((((((((((...........((((...........))))))))))))))))))........)))))))..).... ( -37.59) >consensus UACCUACACAUAUACUUGCCCAGGAAUCGUGCUAAAGCUUAGCGAUGCAGCGG_UACCACCGAAUGGGAUUACAGUAAAAUCCAACCGCUGCAUCGCUUACAAACUGCACAGUGCCACCC ......................((.(((((((........(((((((((((((...........((......))...........)))))))))))))........))))))).)).... (-22.84 = -26.34 + 3.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:48 2006