Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,696,772 – 3,696,888 |
Length | 116 |
Max. P | 0.949980 |
Location | 3,696,772 – 3,696,888 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.08 |
Mean single sequence MFE | -34.50 |
Consensus MFE | -17.00 |
Energy contribution | -20.70 |
Covariance contribution | 3.70 |
Combinations/Pair | 1.12 |
Mean z-score | -2.48 |
Structure conservation index | 0.49 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.949980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3696772 116 - 22224390 ACAUUCAAGACAAGACA--UUCAUCACACUCAAGACUUGGCAAGUGCAACAUCGUAUGUUGCAGGUGCUCGGAUCCAAACUGGUGGAACCCACGCCACGAGUUUGGCUCUGAUUCGAU ..........((((...--................))))(((..((((((((...))))))))..)))(((((.(((((((.((((........)))).))))))).)))))...... ( -37.61) >DroSec_CAF1 30323 111 - 1 ACAUUCAA-----GACA--UUCAUCACACUCAAGACACGGCAAGUGCAACAUCGUAUGUUGCAGGUGCUCGGAGCCAAACUGGUGGAACCCACGCCACGAGUUUGGCUCUGAUUCGAU ........-----....--..................(((((..((((((((...))))))))..)))(((((((((((((.((((........)))).)))))))))))))..)).. ( -44.20) >DroSim_CAF1 33394 111 - 1 ACAUUCAA-----GACA--UUCAUCACACUCAAGACACGGCAAGUGCAACAUCGUAUGUUGCAGGUGCUCGGAGCCAAACUGGUGGAACCCACGCCACGAGUUUGGCUCUGAUUCGAU ........-----....--..................(((((..((((((((...))))))))..)))(((((((((((((.((((........)))).)))))))))))))..)).. ( -44.20) >DroEre_CAF1 35233 91 - 1 ACAGUCGA-----GACA--UUCAUCACACUCAAGACUCGGCAAGUGCAACAUCGAAUGUUGCAGGUGCUCGGAUGCAAACCGGUGGAACCCACGCCAC-------------------- ...(((((-----(...--................))))))...((((((((...))))))))(((((......))..)))((((.......))))..-------------------- ( -24.71) >DroYak_CAF1 30827 108 - 1 ACAUUCGA-----GACA--UUCAUCACACUCGAGACUCGGCAAGUGCAACAUCGUAUAAUGCAGGUGCUCGGAUCCAAACUGGUGGAACCCACGCCACGAGU---GCUUUGAUUCAAG ........-----((..--.(((...((((((.((..(((((..((((...........))))..))).))..)).....(((((.......))))))))))---)...))).))... ( -29.70) >DroAna_CAF1 32021 93 - 1 ---UUCAA-----AACAAGUGCAACACACUCU-----------CUGCCGGACCGGGUGUUGCAGGUGUUCCAA---AAAC---UGGAACCCACGCCACGAGUUUGCCUCCGAUUCGAU ---.....-----......((((((((....(-----------(.....))....))))))))((.((((((.---....---))))))))......((((((.......)))))).. ( -26.60) >consensus ACAUUCAA_____GACA__UUCAUCACACUCAAGACUCGGCAAGUGCAACAUCGUAUGUUGCAGGUGCUCGGAUCCAAACUGGUGGAACCCACGCCACGAGUUUGGCUCUGAUUCGAU .......................................(((..((((((((...))))))))..)))(((((.(.(((((.((((........)))).))))).).)))))...... (-17.00 = -20.70 + 3.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:46 2006