Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,694,878 – 3,694,970 |
Length | 92 |
Max. P | 0.615452 |
Location | 3,694,878 – 3,694,970 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 84.51 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -14.89 |
Energy contribution | -15.53 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.05 |
Mean z-score | -2.56 |
Structure conservation index | 0.54 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3694878 92 - 22224390 UCAAAACUGCUAAGCUGCAAAG-----CUAAAAACAGCAAAUUGCAUGUGCAGUGCUAAGCGGUAAGCGGUAAGCGGUGAGCGGUAAGCGCCGAGCG .....((((((..(((((..((-----(.....(((((.....)).))).....)))..))))).))))))..((..((.(((.....))))).)). ( -28.10) >DroSec_CAF1 28432 86 - 1 UCAAAACUGCUACGCUGCAAAG-----CUGAAAACAGCAAAUUGCAUGUGCAGUGCUAAGCGGUAAGCGGUAAGCGCCGAGCGGUAC------AGCG .....(((((.(((.(((((.(-----(((....))))...)))))))))))))(((..((.((...((((....)))).)).))..------))). ( -29.40) >DroSim_CAF1 31509 86 - 1 UCAAAACUGCUAAGCUGCAAAG-----CUGAAAACAGCAAAUUGCAUGUGCAGUGCUAAGCGGUAAGCGGUAAGCGCCGAGCGGUAC------AGCG .....((((((.(((......(-----(((....))))..(((((....)))))))).))))))..((.(((.((.....))..)))------.)). ( -28.50) >DroEre_CAF1 33321 85 - 1 UCAAAACUGCUGGGCGGCAAAGCA------AAAACAGCAAAUUGCAUGUGCAGUGGUAAGCGGUGAGCGGUAAGCGCCGAGCGGUAA------AGCG .....((((((.((((((...((.------...((.((..(((((....))))).....)).))..)).))...)))).))))))..------.... ( -26.50) >DroYak_CAF1 28961 84 - 1 UCAAAACUGCUAAGCUAAAAUGCAAUGCUGAAAACAGCAAAUUGCAUGUGCAGUGGUAAGC-------GGUAAGCGCCGAGCGGUAA------AGCG .....((((((..((....(((((((((((....)))))..))))))..))..((((..((-------.....))))))))))))..------.... ( -26.50) >consensus UCAAAACUGCUAAGCUGCAAAG_____CUGAAAACAGCAAAUUGCAUGUGCAGUGCUAAGCGGUAAGCGGUAAGCGCCGAGCGGUAA______AGCG .....((((((..((((.................))))..(((((....))))).............((((....))))))))))............ (-14.89 = -15.53 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:45 2006