Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,690,540 – 3,690,632 |
Length | 92 |
Max. P | 0.736319 |
Location | 3,690,540 – 3,690,632 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 76.51 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -16.55 |
Energy contribution | -16.92 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.44 |
Mean z-score | -1.74 |
Structure conservation index | 0.56 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3690540 92 - 22224390 CUAAGACCAAGCUUGGAG---UCUGUGGCCAUGGUUGUCUUUGGUGCGCAGAUUGCAGAUCUUGAGAU---UCAUGAGUCAUACUGUAAAAGCGGGAA .......((((.(((.((---((((((((((.((....)).)))).)))))))).)))..)))).(((---(....))))...((((....))))... ( -26.20) >DroPse_CAF1 28745 85 - 1 GUAGAACU-CGUUUGGAGUCGUCUGUGGCCAUGGUU-----UGG----CAGAU--CAGACUCCGACUCCAACUCUGACUCCAACUGUGACU-CAGAGC ........-...(((((((((((((..((((.....-----)))----)....--)))))...))))))))((((((.(((....).)).)-))))). ( -32.70) >DroSec_CAF1 24195 92 - 1 CCAAGACCAAGCUUGGAG---UCUGUGGCCAUGGUUGUCUUUGGGGCGCAGAUUGCAGAUCUUGAGAU---UCAUGAGUCAUCCUGUAAAAGCGGGAA .......((((.(((.((---((((((.((..((....))...)).)))))))).)))..)))).(((---(....)))).((((((....)))))). ( -31.00) >DroSim_CAF1 27250 92 - 1 CUAAGACCAAGCUUGGAG---UCUGUGGCCAUGGUUGUCUUUGGUGCGCAGAUUGCAGAUCUUGAGAU---UCAUGAGUCAUCCUGUAAAAGCGGGAA .......((((.(((.((---((((((((((.((....)).)))).)))))))).)))..)))).(((---(....)))).((((((....)))))). ( -30.70) >DroEre_CAF1 29113 91 - 1 CCAAGAGCAGUCUUGGAG---UCUGUGGCCAUGGUUGUCUUGGGUGCGCGGAUUGCAGAUCCUGGGUU---UUAUGAGUCAUUCUGCAAAA-CGGGAA ((((((.((..(.(((..---.......))).)..))))))))...(.((..(((((((...(((.((---....)).))).)))))))..-)).).. ( -29.30) >DroYak_CAF1 24580 92 - 1 CUAAGACCAGUCUUGGAG---UUUGUGGCCAUGGUCGUCUUUGGUGGGUGGAAUGCAGAUCCUGAGAC---UUAUGAGUCAUCCUGUAAAAGCGGGAA ....(((((((((..(..---(((((..((((..(((....)))...))))...)))))..)..))))---...)).))).((((((....)))))). ( -28.50) >consensus CUAAGACCAAGCUUGGAG___UCUGUGGCCAUGGUUGUCUUUGGUGCGCAGAUUGCAGAUCCUGAGAU___UCAUGAGUCAUCCUGUAAAAGCGGGAA (((((......))))).........(((((((((..((((..((...((.....))....))..))))...))))).))))(((((......))))). (-16.55 = -16.92 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:42 2006