Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,680,940 – 3,681,032 |
Length | 92 |
Max. P | 0.541901 |
Location | 3,680,940 – 3,681,032 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 88.15 |
Mean single sequence MFE | -18.80 |
Consensus MFE | -14.86 |
Energy contribution | -14.97 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.90 |
Structure conservation index | 0.79 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3680940 92 + 22224390 GACUUCGAAGCUUAGAUUUAAAGUUGAGAAGAAUAGCUCGAAUAGAUCAAGUAACAUUUUUCUUGUUUAAAUUUAUAAACGAAGACCAUUGU ..(((((.....((((((((((..((((((((((.(((.((.....)).)))...))))))))))))))))))))....)))))........ ( -18.70) >DroSec_CAF1 14922 86 + 1 GACUUCGAAGCUUAAAUUUAAACUUGAGCAGAACCACUCGAAUUGAUCCAG------UUUUCUUGUUUAAAUUUAUAAGCGAAGACCAUUGU ..(((((.....(((((((((((..(((........)))((((((...)))------)))....)))))))))))....)))))........ ( -17.70) >DroSim_CAF1 17646 86 + 1 GACUUCGAAGCUUAAAUUUAAACUUGAGCAGAACCACUCGAACUGAUCCAG------UUUUCUUGUUUAAAUUUAUAAGCGAAGACCAUUGU ..(((((.....(((((((((((..(((........)))((((((...)))------)))....)))))))))))....)))))........ ( -20.00) >consensus GACUUCGAAGCUUAAAUUUAAACUUGAGCAGAACCACUCGAAUUGAUCCAG______UUUUCUUGUUUAAAUUUAUAAGCGAAGACCAUUGU ..(((((.....((((((((((((((((........)))))...((..............))..)))))))))))....)))))........ (-14.86 = -14.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:39 2006