Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,674,663 – 3,674,783 |
Length | 120 |
Max. P | 0.548382 |
Location | 3,674,663 – 3,674,783 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.56 |
Mean single sequence MFE | -46.50 |
Consensus MFE | -27.89 |
Energy contribution | -28.64 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.16 |
Mean z-score | -2.56 |
Structure conservation index | 0.60 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3674663 120 + 22224390 CCUGGGUGAUCUUCAACUUUUACAUGGCCGCCAAUGUGGCCGGAUGGCAGCAGGCCGGAGUCAAUCACAUUCUUAUCUUCGAAAUAGACCCCAGAAGUCAUCUGCAGCCGGCCACAUUUC ....((((..(..............)..))))(((((((((((...((((..(((.((.(((.((....(((........))))).))).))....)))..))))..))))))))))).. ( -38.14) >DroVir_CAF1 47831 120 + 1 CCUGGGUGAUAUUUAACUUUUAUAUGGCCGCCAAUGUGGCCGGCUGGCAGCGAGCGGGCGUCAAUCAUGUGCUCAUCUUUGAGAUCGAUCCGCGCAGUCACCUGCAGCCGGCCACAUUUC ....(((.((((.........)))).)))...((((((((((((((.(((...((..((((..(((.....((((....))))...)))..)))).))...))))))))))))))))).. ( -50.00) >DroGri_CAF1 22054 120 + 1 CGUGGGUAAUCUUUAACUUUUACAUGGCCGCCAAUGUGGCCGGGUGGCAGCGCUCGGGCGUCAAUCAUGUGCUCAUCUUUGAGAUUGAUCCGCGCAGUCAUCUGCAGCCGGCCACAUUCC .((((((((..........))))....)))).(((((((((((((((..((((....))))..((((....((((....))))..))))))))((((....))))..))))))))))).. ( -45.00) >DroWil_CAF1 17979 120 + 1 CCUGGGUCAUAUUCAAUUUUUUUAUGGCCGCCAAUGUGGCGGGCUGGCAGCGUGCAGGAGUGAAUCAUAUAUUGAUCUUUGAGAUUGAUCCUAGAAGUCAUUUGCAGCCGGCUACAUUUC ....(((((((...........)))))))...((((((((.(((((((.....))..((((((.((....((..(((.....)))..))....))..)))))).))))).)))))))).. ( -39.50) >DroMoj_CAF1 15804 120 + 1 CGUGGGUGAUCUUUAACUUUUUCAUGGCCGCGAAUGUCGCCGGCUGGCAGCGGGCGGGCGUCAAUCAUGUGCUAAUCUUUGAGAUUGACCCGCGCAGCCAUCUGCAGCCGGCGACAUUCC .((((((((............))))..))))(((((((((((((((.(((.(((((((.(((((((................))))))))).)))..))..)))))))))))))))))). ( -56.59) >DroAna_CAF1 8804 120 + 1 CCUGGGUGAUCUUCAACUUCUUCAUGGCCGCCAACGUGGCCGGCUGGCAGCGGGCUGGCGUCAACCAUGUCCUCAUCUUCGAGAUCGAUCCGAGAAGCCACCUACUGCCGGCCACCUUUC ...((((..................((((((....))))))(((((((((..((.(((((.((....)).)(((....(((....)))...)))..))))))..)))))))))))))... ( -49.80) >consensus CCUGGGUGAUCUUCAACUUUUACAUGGCCGCCAAUGUGGCCGGCUGGCAGCGGGCGGGCGUCAAUCAUGUGCUCAUCUUUGAGAUUGAUCCGAGAAGUCAUCUGCAGCCGGCCACAUUUC ....(((.((.............)).)))...((((((((((((((.(((...((.((.(((.(((................))).))))).....))...))))))))))))))))).. (-27.89 = -28.64 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:38 2006