Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,663,012 – 3,663,123 |
Length | 111 |
Max. P | 0.709235 |
Location | 3,663,012 – 3,663,123 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.61 |
Mean single sequence MFE | -34.55 |
Consensus MFE | -23.66 |
Energy contribution | -23.22 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.13 |
Mean z-score | -2.50 |
Structure conservation index | 0.68 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3663012 111 - 22224390 AGUCUGCUUCACUGACAAUUACAAUAGCUCAAUCAAGUAGACAACAGUCACCUGGCUGGCAAGACACAUGGUUCCGAGACCGGGCCUCAUCUCCAUGUUG---------GCUCUCUUGCC .((((((((.(.(((.............))).).))))))))..(((((....)))))((((((.....((((....))))(((((.(((....)))..)---------)))))))))). ( -34.42) >DroSec_CAF1 14892 120 - 1 AGUCUGCUUCACUGACAAUUACAAUAGCUCAAUCAAGUAGACAACAGUCACCUGGCUGGCAAGACAAAUUGCUCCGAGACCGGGCCUCAUCUCCAUGUUGUCUCCGUUGUCUCUCUUGCC .((((((((.(.(((.............))).).))))))))..(((((....)))))((((((...........(((((((((...((.(.....).))..))))..))))))))))). ( -30.72) >DroYak_CAF1 17252 111 - 1 AGUCUGCUUGACUGACAAUUACAAUAGCUCAAUCAAGUAGACAGCAGUCACCUGGCUGGCAGCGCACAUGGUCCCAAGACCGGGCCUCAUCUCCACGUUG---------CCUCCAUUGCC .((((((((((.(((.............))).)))))))))).((((.....(((..(((((((.....((((....))))(((.......))).)))))---------)).))))))). ( -38.52) >consensus AGUCUGCUUCACUGACAAUUACAAUAGCUCAAUCAAGUAGACAACAGUCACCUGGCUGGCAAGACACAUGGUUCCGAGACCGGGCCUCAUCUCCAUGUUG_________CCUCUCUUGCC .((((((((.(.(((.............))).).))))))))..(((((....)))))((((((.....(((((.......))))).((.(.....).)).............)))))). (-23.66 = -23.22 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:33 2006