Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 497,693 – 497,812 |
Length | 119 |
Max. P | 0.659397 |
Location | 497,693 – 497,812 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.17 |
Mean single sequence MFE | -47.52 |
Consensus MFE | -31.19 |
Energy contribution | -32.78 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.37 |
Mean z-score | -1.68 |
Structure conservation index | 0.66 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 497693 119 + 22224390 AGUUGGGUAUUACGAAUCUGGAGCAGAUGCUUCAAGUGCCGUUUGGCCAGUUGACCGAGGCUGGCCUAACUCUGGUCGAGAUCGGUGAGAUUCAGCGCAAAGCCGAGGACGCCAAGCCG- .....(((.....((.(((.((.((((.((.......)).(((.((((((((......)))))))).))))))).)).)))))((((...(((.((.....)).)))..))))..))).- ( -42.50) >DroVir_CAF1 7245 119 + 1 AGCUGGGCAUUAGCAAUCUGGAGCAGAUGCUGCAGGUGCCCUUCGGCCAGCUAACCGAGGCGGGCCUCACGCUGCCCGAAAUUGGUGAGAUCCAGCGCAAGGCCGAGGAGGCCAAGCCC- ....((((.......(((((.(((....))).)))))(((((((((((.(((.(((((..(((((........)))))...))))).......)))....)))))))).)))...))))- ( -54.80) >DroGri_CAF1 6182 119 + 1 AGCUGGGCAUCACUAAUCUGGAGCAGAUGCAGCAGGUGCCAUUCGGCCAGCUAACCAAAGUGGGUCUCACACUGCUCGAAAUUGGUGAGAUCCAGCGCAAGGUCGAGGAGGCCAAGCCG- .((((((..((((((((.(.((((((..(((.....))).....((((.(((......))).)))).....)))))).).))))))))..))))))((..((((.....))))..))..- ( -48.60) >DroMoj_CAF1 7179 119 + 1 AGCUGGGCAUUACGAAUCUGGAGCAGAUGCUUCAGGUGCCCUUCGGUCAGCUGACCGAGGUGGGACUAACGCUGUCCGAGCUGGGUGAGAUCCAGCGCAAGGCCGAGGAGGCCAAGCCU- .((((((((...((...(((((((....)))))))((.((((((((((....)))))))).)).))...)).)))))).(((((((...)))))))))..((((.....))))......- ( -56.30) >DroAna_CAF1 7836 119 + 1 AGCUGGGCAUCACCAACCUGGAGCAGAUGAUGCAGAUUCCGUUAUGCCAGCUGACCGACGCCGGCCUGACGCUGAUCGAGAUCGGGGAGAUCCAGCGCAAGGCCGAGGACGCCAAGUCC- ((((((((((((((.....))......)))))).(....)......)))))).........((((((..(((((.....((((.....)))))))))..)))))).((((.....))))- ( -43.60) >DroPer_CAF1 2196 120 + 1 AGCUGGGCAUUAGUAAUCUAGAGCAGAUGCUCGAAGUGCCCUUUGGCCAGCUGACGGAGGUGGGACUGACGCUGCUCGAGAUUGGGGAUAUACAGCGCAAGGCAUUGGAGGCCAAGGAAA .((((...(((..((((((.((((((..((.(((((....)))))))(((((.((....)).)).)))...)))))).))))))..)))...))))....(((.......)))....... ( -39.30) >consensus AGCUGGGCAUUACCAAUCUGGAGCAGAUGCUGCAGGUGCCCUUCGGCCAGCUGACCGAGGCGGGCCUAACGCUGCUCGAGAUUGGUGAGAUCCAGCGCAAGGCCGAGGAGGCCAAGCCC_ .((((((..(((((.((((.((((((..((.......)).....((((.(((......))).)))).....)))))).)))).)))))..))))))((..(((.......)))..))... (-31.19 = -32.78 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:50 2006