Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,660,438 – 3,660,534 |
Length | 96 |
Max. P | 0.999221 |
Location | 3,660,438 – 3,660,534 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 90.06 |
Mean single sequence MFE | -24.06 |
Consensus MFE | -22.36 |
Energy contribution | -22.76 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.93 |
SVM decision value | 3.44 |
SVM RNA-class probability | 0.999221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3660438 96 - 22224390 UACA--CAAAACACCAGGCCACUUCACUCUAAUUCCGAUUCCGAAUCGGAAUACGACGCCUACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA ....--..........(((((..(((.((((((((((((.....))))))))...........)))))))....)))))((((((...)))))).... ( -24.50) >DroSec_CAF1 12336 94 - 1 G--A--CAACACACCAGGCCACUUCACUCUAAUUCCGAUUCCGAAUCGGAAUACGACGCCUACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA .--.--..........(((((..(((.((((((((((((.....))))))))...........)))))))....)))))((((((...)))))).... ( -24.50) >DroSim_CAF1 8093 94 - 1 G--A--CAACACACCAGGCCACUUCACUCUAAUUCCGAUUCCGAAUAGGAAUACGACGCCAACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA .--.--..........(((((..(((.((((....(((((((.....))))).))........)))))))....)))))((((((...)))))).... ( -22.10) >DroEre_CAF1 13203 98 - 1 UGCUCGAAAGACACCAGGCCACUUCACUCUAAUUCCGAUUCCGAAUCGGAAUACGACGCCUACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA .((((....)).....(((((..(((.((((((((((((.....))))))))...........)))))))....)))))((((((...)))))).)). ( -28.20) >DroYak_CAF1 13337 85 - 1 UUC-------------AGCCACUUCACUCUAAUUCCGAUUCCGAAUCGGAAUACGACGCCUACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA ...-------------.((((..(((.((((((((((((.....))))))))...........)))))))....)))).((((((...)))))).... ( -21.00) >consensus U_CA__CAACACACCAGGCCACUUCACUCUAAUUCCGAUUCCGAAUCGGAAUACGACGCCUACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA ................(((((..(((.((((((((((((.....))))))))...........)))))))....)))))((((((...)))))).... (-22.36 = -22.76 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:26 2006