Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,660,259 – 3,660,371 |
Length | 112 |
Max. P | 0.989877 |
Location | 3,660,259 – 3,660,371 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.81 |
Mean single sequence MFE | -41.14 |
Consensus MFE | -36.80 |
Energy contribution | -37.76 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.09 |
Mean z-score | -1.95 |
Structure conservation index | 0.89 |
SVM decision value | 2.19 |
SVM RNA-class probability | 0.989877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3660259 112 + 22224390 AAUGGAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCACGGUUUCGUCGCAAAGCAUUGU-------CU ................((((((((.((((((((((((((....))))))))((((((((((.((......))..)))))(((....))).))))))))))).))).))))-------). ( -41.50) >DroSec_CAF1 12157 112 + 1 AAUGGAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCACGGUUCCGUCGCCAAGCAUUGU-------CU ...(.((((.((((((.....)))))))))).)((..(((.((((....((((((((((((.((......))..)))))(((....))).))))))).))))..)))..)-------). ( -43.00) >DroSim_CAF1 7914 112 + 1 AAUGGAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCACGGUUCCGUCGCAAAGCAUUGU-------CU ................((((((((.((((((((((((((....))))))))((((((((((.((......))..)))))(((....))).))))))))))).))).))))-------). ( -44.40) >DroEre_CAF1 13044 94 + 1 AAUGAAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCAU------------------UGU-------CU ..((.((((.((((((.....)))))))))).))..((..((((...(((((((.((((............)))).)))))))..))))------------------..)-------). ( -33.60) >DroYak_CAF1 13149 119 + 1 AAUGAAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCACGGUUUCGUCGCAAAGCAUUGUCUGCCAUCU ..............(((.(((((.((((..((((((((...(((...(((((((.((((............)))).)))))))..))).....))))))))..)))).))))).))).. ( -43.20) >consensus AAUGGAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCACGGUUCCGUCGCAAAGCAUUGU_______CU .(((((......(((((((((.((.(((..(((((((((....)))))))))..))).)))))))))))........(((((....))))).)))))...................... (-36.80 = -37.76 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:25 2006