Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,657,056 – 3,657,156 |
Length | 100 |
Max. P | 0.934257 |
Location | 3,657,056 – 3,657,156 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 84.21 |
Mean single sequence MFE | -26.56 |
Consensus MFE | -19.10 |
Energy contribution | -20.66 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.12 |
Mean z-score | -2.37 |
Structure conservation index | 0.72 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934257 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3657056 100 + 22224390 AUAGUUUGUUUGUCUUUGCGAGGCCAAACCACUAGU-------UGCUGGAUGGCUUUUGCCUGUUUUGCCAAAAAAAAAAAAACCAAACCGCGAUUGCAAACCUGAA .......((((((..(((((((((.((((((((((.-------..)))).))).))).))))(((((............))))).....)))))..))))))..... ( -25.50) >DroSec_CAF1 8990 93 + 1 AUAGUUUGUUUGUCUUUGCGAGGCCAAACCACUAGU-------UGUUGGAUGGCUUUUGCCUGUUUUGCCAAA-------AAACCAAACCGCGAUUGCAAACCUGAA .......((((((..(((((((((.((((((((((.-------..)))).))).))).))))(((((.....)-------)))).....)))))..))))))..... ( -24.60) >DroSim_CAF1 4835 81 + 1 AUAGUUUGUUUGUCUUUGCGAGGCCAAACCACUAGU-------U--------------GCCUGUUUUGCCAAAA-----AAAACCAAACCGCGAUUGCAAACCUGAA .......((((((..(((((((((..(((.....))-------)--------------))))(((((.......-----))))).....)))))..))))))..... ( -19.10) >DroEre_CAF1 9926 101 + 1 CCAGUUUGUUUGUCUUUGCGAGGCUAAACCAUUAGUUGCUAGUUGCUGGAUGGCUUUUGCCUGUUUUGUCAAAA------AAACUAAACCGCGAUUGCAAACCUGAA .(((...((((((..(((((((((.((((((((....((.....))..))))).))).))))(((((......)------)))).....)))))..))))))))).. ( -31.20) >DroYak_CAF1 9982 93 + 1 CCAGUUUGUUUGUCUUUGCGAGGCCAAGCCAUUAGU-------UGCUGGAUGGCUUUUGCCUGUUUUGUCAAA-------AAACUAAACCGCGAUUGCAAACCUGAA .(((...((((((..(((((((((.((((((((...-------.....))))))))..))))(((((.....)-------)))).....)))))..))))))))).. ( -32.40) >consensus AUAGUUUGUUUGUCUUUGCGAGGCCAAACCACUAGU_______UGCUGGAUGGCUUUUGCCUGUUUUGCCAAAA______AAACCAAACCGCGAUUGCAAACCUGAA .(((...((((((..(((((((((.(((((((((((........))))).))).))).))))((((..............)))).....)))))..))))))))).. (-19.10 = -20.66 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:20 2006