Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 494,794 – 494,912 |
Length | 118 |
Max. P | 0.603539 |
Location | 494,794 – 494,912 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.18 |
Mean single sequence MFE | -28.56 |
Consensus MFE | -14.78 |
Energy contribution | -14.74 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.15 |
Mean z-score | -2.55 |
Structure conservation index | 0.52 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 494794 118 + 22224390 AGCAUUUAUUCAAGCAACGCUUGAUUUUAGUGUUAACCAAUUCCUUUCAUUUGUGUUCAAAAUU-UUGACCGCCAAUGGGGUGAUUCAAAUAAUCCCCGAAUGAUUUUGGAAAAAAA-GA ((((((...((((((...))))))....))))))......((((..(((((((((.((((....-)))).))).....(((.((((.....)))))))))))))....)))).....-.. ( -28.80) >DroSec_CAF1 7556 114 + 1 AGCAUUUUAUCAAGCAACGCUUGAUUUUAGUGUAAACCAAUUCCUUUCAUU-CUGUUCAAAAUU-UUGAU---CAAUGGGGCGAUUCAAAUAAUCCCCGAAUGAGUUUGGAAAAAAA-GA .(((((..(((((((...)))))))...))))).......((((.((((((-(((.((((....-)))).---))...(((.((((.....))))))))))))))...)))).....-.. ( -30.90) >DroSim_CAF1 8181 114 + 1 AGCAUUUUAUAUAGCAACGCUUGAUUUUAGUGUAAACCAAUUCCUUUCAUU-CUGUUCAAAAUU-UUGAU---CAAUGGGGCGAUUCAAAUAAUCCCCGAAUGAGUUUGGAAAAAAA-GA .((..........)).(((((.......))))).......((((.((((((-(((.((((....-)))).---))...(((.((((.....))))))))))))))...)))).....-.. ( -23.70) >DroEre_CAF1 8463 118 + 1 AGCAUUCAUUCAAGCAACGCUUGAUUUUAGUGUAACCCAAUUCCGUUCAUU-CUGUUCAAAAUU-GUGACCGCUAAUGGGACAUUUCAUAUCAUCCUUGAAUGUCUUUGGAAACAAGGGA .(((((((.((((((...))))))....(((((..((((.(..((.((((.-............-)))).))..).)))))))))............)))))))(((((....))))).. ( -29.12) >DroYak_CAF1 7977 119 + 1 AGCAUUCAUUCAAGAUACGCUUGAUUUUAGUGUAAACCAAUUCCUUUCGUU-CAGUUGAAAAUUUUUUACUGCUAAUGGGACGAUUCACAUCAUUCUUGAAUGUCUUUGGAAACAAAGGA ......(((((((((((((((.......)))))).......((.(..((((-((((.(((....))).))))..))))..).))..........)))))))))((((((....)))))). ( -30.30) >consensus AGCAUUUAUUCAAGCAACGCUUGAUUUUAGUGUAAACCAAUUCCUUUCAUU_CUGUUCAAAAUU_UUGAC_GCCAAUGGGGCGAUUCAAAUAAUCCCCGAAUGACUUUGGAAAAAAA_GA .(((((...((((((...))))))....)))))...((((.....(((........((((.....))))........((((.............))))))).....)))).......... (-14.78 = -14.74 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:49 2006