Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,627,339 – 3,627,432 |
Length | 93 |
Max. P | 0.777187 |
Location | 3,627,339 – 3,627,432 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.79 |
Mean single sequence MFE | -39.42 |
Consensus MFE | -28.17 |
Energy contribution | -29.92 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.17 |
Mean z-score | -1.73 |
Structure conservation index | 0.71 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3627339 93 - 22224390 CAUCUCGCCUCCAUUAUUGGAGUGUUGAGGUGGGGGCGGCGGU---GGUUGCUGCAUUCCCAGUGUGGGCGCAAAGGCGGGAUGUUG---------CUGUUGAAU (((((((((((((....))))(((((.(.(((((.((((((..---...))))))...)))).).).)))))...)))))))))...---------......... ( -39.80) >DroSec_CAF1 6676 93 - 1 CAUCUCGCCUCCAUUAUUGGAGUGUUGAGGUGGUGGCGGCGGU---GGUUGCUGCAUUCCCAGUGUGGGCGCAAAGGCGGGAUGUUG---------CUGUUGAAU (((((((((((((....))))(((((.(.((((..((((((..---...))))))....))).).).)))))...)))))))))...---------......... ( -36.20) >DroEre_CAF1 6774 102 - 1 CAUCUCGCCUCCAUUAUUAGAGUGCUGAGGGGGCGGCGGCGGC---GGCUGCUGCAUUCCAAGUGCGGGCGCAAAGGCGGGAUGUUGCUGUUGUUGCUGUUGAAU .....(((((((....((((....)))))))))))((((((((---(((.((.(((((((...(((....))).....))))))).)).)))))))))))..... ( -44.30) >DroAna_CAF1 12026 92 - 1 GGCCACGCCCCCAUUGUUUGAAUGCUGCUGCGGGGGCGGCGGUGGAGGCUGCUGCAUGCCCAGGGCGGGUGGAAAGGCGGGAUGCUG---------UUGUU---- ..((((.(((((...........((....))(((.((((((((....))))))))...))).))).))))))...(((((....)))---------))...---- ( -37.40) >consensus CAUCUCGCCUCCAUUAUUGGAGUGCUGAGGUGGGGGCGGCGGU___GGCUGCUGCAUUCCCAGUGCGGGCGCAAAGGCGGGAUGUUG_________CUGUUGAAU (((((((((((((....))))(((((..(.((((.(((((((......)))))))...)))).)...)))))...)))))))))..................... (-28.17 = -29.92 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:11 2006