Locus 1217

Sequence ID X_DroMel_CAF1
Location 3,623,668 – 3,623,762
Length 94
Max. P 0.937939
window1954 window1955

overview

Window 4

Location 3,623,668 – 3,623,762
Length 94
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 92.52
Mean single sequence MFE -20.70
Consensus MFE -18.69
Energy contribution -18.80
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.12
Structure conservation index 0.90
SVM decision value 0.73
SVM RNA-class probability 0.835310
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3623668 94 + 22224390
-UUGUUUUUGCUGUUUUACUGCUUUUUCUUUUGUU-UUCUUUGGCUUGAAGUCAACGUCUCUUGCGGGACAACAGCAA-ACCAGUUUAAAAAAAUAC---
-.....(((((((((....................-....(((((.....))))).(((((....)))))))))))))-).................--- ( -19.40)
>DroSec_CAF1 2567 93 + 1
-UUGUUUUUGCUGUUUUACUGCUUUUUCUUUUGUU-UUCUUUGGCUUGAAGUCAACGUCUCUUGCGGGACAACAGCAA-ACCAGUUUAAA-AAAUAC---
-.....(((((((((....................-....(((((.....))))).(((((....)))))))))))))-)..........-......--- ( -19.40)
>DroEre_CAF1 2595 99 + 1
UUUGUUUUUGCUGU-UUACUGCUUUUUCUUUUGUUUUUCUUUGGCUUGAAGUCAACGUCUCUUGCGAGACAACAGCAAAACCAGUUUAAUAAAACACAAA
..((.(((((((((-(........................(((((.....))))).(((((....))))))))))))))).))((((....))))..... ( -23.30)
>consensus
_UUGUUUUUGCUGUUUUACUGCUUUUUCUUUUGUU_UUCUUUGGCUUGAAGUCAACGUCUCUUGCGGGACAACAGCAA_ACCAGUUUAAAAAAAUAC___
.(((...((((((((.........................(((((.....))))).(((((....)))))))))))))...)))................ (-18.69 = -18.80 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 3,623,668 – 3,623,762
Length 94
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 92.52
Mean single sequence MFE -21.47
Consensus MFE -18.57
Energy contribution -18.57
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.92
Structure conservation index 0.86
SVM decision value 1.27
SVM RNA-class probability 0.937939
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3623668 94 - 22224390
---GUAUUUUUUUAAACUGGU-UUGCUGUUGUCCCGCAAGAGACGUUGACUUCAAGCCAAAGAA-AACAAAAGAAAAAGCAGUAAAACAGCAAAAACAA-
---.............(((.(-(((((((((((.(....).)))(((..(((.......)))..-))).........))))))))).))).........- ( -19.40)
>DroSec_CAF1 2567 93 - 1
---GUAUUU-UUUAAACUGGU-UUGCUGUUGUCCCGCAAGAGACGUUGACUUCAAGCCAAAGAA-AACAAAAGAAAAAGCAGUAAAACAGCAAAAACAA-
---......-......(((.(-(((((((((((.(....).)))(((..(((.......)))..-))).........))))))))).))).........- ( -19.40)
>DroEre_CAF1 2595 99 - 1
UUUGUGUUUUAUUAAACUGGUUUUGCUGUUGUCUCGCAAGAGACGUUGACUUCAAGCCAAAGAAAAACAAAAGAAAAAGCAGUAA-ACAGCAAAAACAAA
.((((((((....))))...(((((((((((((((....)))))(((...(((........))).)))................)-))))))))))))). ( -25.60)
>consensus
___GUAUUUUUUUAAACUGGU_UUGCUGUUGUCCCGCAAGAGACGUUGACUUCAAGCCAAAGAA_AACAAAAGAAAAAGCAGUAAAACAGCAAAAACAA_
................(((...(((((((((((.(....).)))(((...(((........))).))).........))))))))..))).......... (-18.57 = -18.57 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:09 2006