Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,622,714 – 3,622,809 |
Length | 95 |
Max. P | 0.559518 |
Location | 3,622,714 – 3,622,809 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 83.68 |
Mean single sequence MFE | -30.30 |
Consensus MFE | -19.71 |
Energy contribution | -21.52 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.04 |
Mean z-score | -1.65 |
Structure conservation index | 0.65 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3622714 95 + 22224390 AGCGAAUAGAAUAACAGCUCAUUGUGCUGAGCGCCCAGCCUGCGUCGACUGCGACACCAGCGUUAACAGCGACGCCUGCAAAAUUGGGCCACAAA ................(((((......)))))(((((((..((((((.(((.(((......)))..)))))))))..)).....)))))...... ( -30.60) >DroSec_CAF1 1605 95 + 1 AGCGAAUACAAUAACAGCUCAUUGUGCUGAGCGUCCAGCCUGCGUCGACUGCGACACCAGCGUUAACAGCGACGCUUGCAAAAUUGGGCCACAAA ................(((((......)))))(((((((..((((((.(((.(((......)))..)))))))))..)).....)))))...... ( -28.80) >DroEre_CAF1 1598 95 + 1 AGCGAUUACAAUAACAGCUCAUUGUGCUGAGCGCCCAGCCUGCGUCGACUGCGACACCAGCGUUAACAGCGACGCUCGCAAAAUUGGGCCACAAA ................(((((......)))))(((((((..((((((.(((.(((......)))..)))))))))..)).....)))))...... ( -31.40) >DroAna_CAF1 6771 80 + 1 AGCGAGUG-----GCAGG-GA--UUGCUGCGCGCCGAGCCUGCGUCGACAGCGACGCCAGCGUUAACAG-------UGCCAAAUUGGGCCACACA .....(((-----((...-((--((...((((....(((((((((((....))))).))).)))....)-------)))..))))..)))))... ( -30.40) >consensus AGCGAAUACAAUAACAGCUCAUUGUGCUGAGCGCCCAGCCUGCGUCGACUGCGACACCAGCGUUAACAGCGACGCUUGCAAAAUUGGGCCACAAA ..............((((.......)))).(.((((((..(((((((....))))....(((((......)))))..)))...)))))))..... (-19.71 = -21.52 + 1.81)
Location | 3,622,714 – 3,622,809 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 83.68 |
Mean single sequence MFE | -33.67 |
Consensus MFE | -23.42 |
Energy contribution | -24.30 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.08 |
Mean z-score | -1.52 |
Structure conservation index | 0.70 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3622714 95 - 22224390 UUUGUGGCCCAAUUUUGCAGGCGUCGCUGUUAACGCUGGUGUCGCAGUCGACGCAGGCUGGGCGCUCAGCACAAUGAGCUGUUAUUCUAUUCGCU ...((((((((.....((..((((((((((..((....))...)))).))))))..)))))))(((((......)))))............))). ( -37.20) >DroSec_CAF1 1605 95 - 1 UUUGUGGCCCAAUUUUGCAAGCGUCGCUGUUAACGCUGGUGUCGCAGUCGACGCAGGCUGGACGCUCAGCACAAUGAGCUGUUAUUGUAUUCGCU ...((((..((((...(((.((.(((.(((....(((((((((.(((((......)))))))))).))))))).)))))))).))))...)))). ( -32.00) >DroEre_CAF1 1598 95 - 1 UUUGUGGCCCAAUUUUGCGAGCGUCGCUGUUAACGCUGGUGUCGCAGUCGACGCAGGCUGGGCGCUCAGCACAAUGAGCUGUUAUUGUAAUCGCU ...((((((((.....((..((((((((((..((....))...)))).))))))..)))))))(((((......)))))............))). ( -35.50) >DroAna_CAF1 6771 80 - 1 UGUGUGGCCCAAUUUGGCA-------CUGUUAACGCUGGCGUCGCUGUCGACGCAGGCUCGGCGCGCAGCAA--UC-CCUGC-----CACUCGCU .(.(((((((.....))..-------........((((((((((..(((......))).)))))).))))..--..-...))-----))).)... ( -30.00) >consensus UUUGUGGCCCAAUUUUGCAAGCGUCGCUGUUAACGCUGGUGUCGCAGUCGACGCAGGCUGGGCGCUCAGCACAAUGAGCUGUUAUUGUAUUCGCU ...((((((((.....(((........)))....(((.((((((....)))))).))))))))(((((......)))))............))). (-23.42 = -24.30 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:07 2006