Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,622,499 – 3,622,594 |
Length | 95 |
Max. P | 0.506135 |
Location | 3,622,499 – 3,622,594 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 97.89 |
Mean single sequence MFE | -25.26 |
Consensus MFE | -24.13 |
Energy contribution | -24.13 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.96 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3622499 95 + 22224390 AGCGCCUCUGCCUCCGCUCGGAAACGCAGUCGCAGCACGAGUAACGGCAGCAAAAGCAACAACAAAACUGCCAGUGGCCGCAUAUUUACAAAAAG .(((((.((((..(.(((((....)).))).)..)).........(((((.................))))))).)).))).............. ( -24.13) >DroSec_CAF1 1390 95 + 1 AGCGCCUCUGCCUCCGCUCGGAAACGCAGUCGCAGCACGAGUAACGGCAGCAAAAGCAACAACAAAACUGCCAGUGGCCGCAUAUUUACAAAAAG .(((((.((((..(.(((((....)).))).)..)).........(((((.................))))))).)).))).............. ( -24.13) >DroEre_CAF1 1385 95 + 1 AGCGCCUCUGCCUCCGCUCGGAAACGCAGUCGCAGCGCGAGUAACGGCAGCAAAAGCAACAACAAAACUGCCAGUGGCCGCAAAUUUACCAAAAG .((((..((((.(((....)))...))))..)).))(((.((.(((((((.................))))).)).))))).............. ( -27.53) >consensus AGCGCCUCUGCCUCCGCUCGGAAACGCAGUCGCAGCACGAGUAACGGCAGCAAAAGCAACAACAAAACUGCCAGUGGCCGCAUAUUUACAAAAAG .(((((.((((..(.(((((....)).))).)..)).........(((((.................))))))).)).))).............. (-24.13 = -24.13 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:05 2006