Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,592,293 – 3,592,394 |
Length | 101 |
Max. P | 0.961418 |
Location | 3,592,293 – 3,592,394 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 89.32 |
Mean single sequence MFE | -22.38 |
Consensus MFE | -17.50 |
Energy contribution | -19.00 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.79 |
Structure conservation index | 0.78 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3592293 101 - 22224390 ---UCGUUUUAUAGAUGGGAUUGUGUGUAUAUAUCUCGAGACCCCCCUCCUCUCCCCUUUGGACCACUCUCUCCAACGGAUAUACAUAUAUACAUAUACACCAU ---...........((((...(((((((((((((...((((.........)))).((.(((((........))))).))......)))))))))))))..)))) ( -24.80) >DroSec_CAF1 51257 102 - 1 GCGUCGUUUUAUAGAUGGGAUUGUGUGUAUAUAUCUCGAG--UCCCCUCCUCUCCCCUUUGGACCACUCUCUCCAACGGAUAUACAUAUAUACAUAUACACCAU .((((........))))((..(((((((((((((...(((--.......)))...((.(((((........))))).))......)))))))))))))..)).. ( -25.50) >DroSim_CAF1 38062 102 - 1 GCGUCGUUUUAUAGAUGGGAUUGUGUGUAUAUAUCUCGAG--CCCCCUCCUCUCCCCUUUGGACCACUCUCUCCAACGGAUAUACAUAUAUACAUAUACACCAU .((((........))))((..(((((((((((((...(((--.......)))...((.(((((........))))).))......)))))))))))))..)).. ( -25.20) >DroYak_CAF1 47523 95 - 1 GCGUCGUUUUAUAGAUGGGAUUGUGUGUAUAUAUCUCGAG--CCCCCUCUCC--CCCUUUUCACCCCACUCUUCAACAGAUAC----AUAUACAUAUACA-CAU .((((........)))).....((((((((((.....(((--....)))...--...............(((.....)))...----......)))))))-))) ( -14.00) >consensus GCGUCGUUUUAUAGAUGGGAUUGUGUGUAUAUAUCUCGAG__CCCCCUCCUCUCCCCUUUGGACCACUCUCUCCAACGGAUAUACAUAUAUACAUAUACACCAU ..............((((...(((((((((((((...(((......)))......((.(((((........))))).))......)))))))))))))..)))) (-17.50 = -19.00 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:04 2006