Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,591,727 – 3,591,833 |
Length | 106 |
Max. P | 0.535281 |
Location | 3,591,727 – 3,591,833 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 92.99 |
Mean single sequence MFE | -27.57 |
Consensus MFE | -20.45 |
Energy contribution | -20.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.57 |
Structure conservation index | 0.74 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535281 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3591727 106 + 22224390 UUUCCAAUUAUUUGGGCUAACAGAGUUGGUGCUAGUAGCAGCUAUUGGCUAACUAACUUACGGUUAGCGGUGUCAUUUUUAUUAUACUAUCCAAAAUACUUGUGAA .((((((.(((((((((((((.((((((((((((((((...))))))))..))))))))...))))))(((((.((....)).)))))..)).))))).))).))) ( -32.20) >DroSec_CAF1 50719 102 + 1 UUUCCAAUUAUUUGGGCUAACCGAGUUGGUACUCGUAGCAGCUAUUGGCUA----ACUUACGGUUAGCGAUGUCAUUUUUAUUAUACUACCCAAAAUACUUGUGAA .((((((.((((((((((((((((((((((....((((...))))..))))----)))..))))))))((((.......)))).......)).))))).))).))) ( -26.30) >DroSim_CAF1 37514 102 + 1 UUUCCAAUUAUUUGGGCUAACCGAGUUGGUGCUCGUAGCAGCUAUUGGCUA----ACUCACAGUUAGCGAUGUCAUUUUUAUUAUACUACCCAAAAUACUUGUGAA .((((((.(((((((((((..(((((....))))))))).(.(((((.(((----((.....)))))))))).)................)).))))).))).))) ( -24.20) >consensus UUUCCAAUUAUUUGGGCUAACCGAGUUGGUGCUCGUAGCAGCUAUUGGCUA____ACUUACGGUUAGCGAUGUCAUUUUUAUUAUACUACCCAAAAUACUUGUGAA .((((((.(((((((((((((...((.(((.....((((........))))....))).)).))))))((((.......)))).......)).))))).))).))) (-20.45 = -20.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:02 2006