Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,590,886 – 3,590,993 |
Length | 107 |
Max. P | 0.631896 |
Location | 3,590,886 – 3,590,993 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.80 |
Mean single sequence MFE | -14.14 |
Consensus MFE | -12.40 |
Energy contribution | -12.65 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.88 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3590886 107 + 22224390 UUUUAACCCCACCGCU---CCCACCAA----CAGUACCCAUCCCAAA----AAAAAAAAAAA--UCCAUACCCUCACACACAUUUAUACGUAGAGCUGCAGAUAUUUUCCAGUUCUGGGG ......((((...(((---........----.)))............----...........--...........................(((((((..((.....))))))))))))) ( -13.60) >DroSec_CAF1 49865 106 + 1 UUUUAACCCCACCGCU---CCCACCAACAAACAGUACCCAUCCCAAA----A-----AAAAA--UCCAUACCAUCACACACAUUUAUACGUAGAGCUGCAGAUAUUUUCCAGUUCUGGGG ......((((......---.......((.....))............----.-----.....--...........................(((((((..((.....))))))))))))) ( -13.40) >DroEre_CAF1 44950 114 + 1 UUUUAACCCCAACGCCGCACGCCCCUC----CACUACCCAUCCCAAACUCAAAAA--AAAAAGUACCAUCCCCUCACACACAUUUAUACGGAGAGCUGCAGAUAUUUUCCAGUUCUGGGG ......(((((..((.(((.((..(((----(.......................--................................)))).))))).((.....))..))..))))) ( -16.16) >DroYak_CAF1 46162 107 + 1 UUUUAACCCCACUGCAGAA-ACCCCCC----CAAUAACCAUCCC----CCAAAAA--AAAAA--ACCAUCCCCUCACACACAUUUAUACGUAGAGCUGCAGAUAUUUUCCAGUUCUGGGG ......((((.........-.......----.............----.......--.....--...............((........))(((((((..((.....))))))))))))) ( -13.40) >consensus UUUUAACCCCACCGCU___CCCACCAA____CAGUACCCAUCCCAAA____AAAA__AAAAA__ACCAUACCCUCACACACAUUUAUACGUAGAGCUGCAGAUAUUUUCCAGUUCUGGGG ......((((.....................................................................((........))(((((((..((.....))))))))))))) (-12.40 = -12.65 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:59 2006