Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,588,322 – 3,588,414 |
Length | 92 |
Max. P | 0.952743 |
Location | 3,588,322 – 3,588,414 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 87.46 |
Mean single sequence MFE | -20.31 |
Consensus MFE | -15.16 |
Energy contribution | -15.76 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.52 |
Structure conservation index | 0.75 |
SVM decision value | 1.43 |
SVM RNA-class probability | 0.952743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3588322 92 + 22224390 UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAUGAACUCAAACCGAUUACCCCGGUAAGAGGAACAGUGGGCAUAGCCCCC------CUCCC-------- (((.((((((....(((((((......))))))).)))))).(((..((((.......))))..))))))....((((...))))..------.....-------- ( -18.40) >DroSec_CAF1 47295 98 + 1 UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAUGAACUCAAACCGAUUACCCCGGUAAGAGGUACAGUGGGCAUAGCCGCC------CUCCCCAC--UGC ....((((((....(((((((......))))))).))))))......(((..((((....))))..))).(((((((..........------...)))))--)). ( -22.92) >DroSim_CAF1 34123 98 + 1 UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAGGAACUCAAACCGAUUACCCCGGUAAGAGGUACAGAGGGCAUAGCCCCC------CUCCCCAC--UGC ....(((((((.................)))))))...((.......(((..((((....))))..)))...(((((........))------))).))..--... ( -19.53) >DroEre_CAF1 42180 106 + 1 UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAUGAACUCAAACCGAUUACCCCGGUGAGAGGUACAGUGGGCAUAGCCCCCUCCAACCACCCCACCCCGC ....((((((....(((((((......))))))).)))))).(((..((((.......))))))).(((..((.((((...)))).))...)))............ ( -21.00) >DroYak_CAF1 43053 89 + 1 UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAUGAACUCAAACCGAUUACCCCGGUUAGAGGAACAGUGGGCAUAGCCAC---------------CC--C (((.((((((....(((((((......))))))).)))))).(((.(((((.......))))).))))))..((((......))))---------------..--. ( -19.70) >consensus UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAUGAACUCAAACCGAUUACCCCGGUAAGAGGUACAGUGGGCAUAGCCCCC______CUCCCCAC___GC ....((((((....(((((((......))))))).)))))).(((..((((.......))))..))).......((((...))))..................... (-15.16 = -15.76 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:58 2006