Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,584,982 – 3,585,083 |
Length | 101 |
Max. P | 0.962996 |
Location | 3,584,982 – 3,585,083 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 88.70 |
Mean single sequence MFE | -42.30 |
Consensus MFE | -37.06 |
Energy contribution | -37.73 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.06 |
Mean z-score | -2.88 |
Structure conservation index | 0.88 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.962996 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3584982 101 - 22224390 ------CGCCGCAGAGAUGAAAACCAUCACUUCCGGAGGCGCUCCAAGUACUGAGGAAUGUAGUAAAUACGUGCGUCGGUAUUGGUGAGCGCUGUCUGUGUG----------UGUGU ------(((((((((((((.....)))).........((((((((.((((((((.(.(((((.....))))).).)))))))).).))))))).)))))).)----------))... ( -41.60) >DroEre_CAF1 38642 117 - 1 ACGCACCGCCGCAGAGAUGAAAACCAUCACUUCCGGAGGCGCUUCAAGUACUGAGGAAUGUAGUAAAUACGUGCGUCGGUAUUGGUGAGCGCUGUCUGUGUGCGUGUAUGAGUGUAU (((((((((((((((((((.....)))).........(((((((..((((((((.(.(((((.....))))).).))))))))...))))))).)))))).))).))....)))).. ( -44.70) >DroYak_CAF1 39606 111 - 1 ACGCACCGCCGCAGAGAUGAAAACCAUCACUUCCGGAGGCGCUUCAAGUACUGAGGAAUGUAGUAAAUACGUGCGUCGGUAUUGGUGAGCGCUGUCUAUGUGUGU------GUGUAU (((((((((......((((.....))))......((((((((((..((((((((.(.(((((.....))))).).))))))))...))))))).)))..))).))------)))).. ( -40.60) >consensus ACGCACCGCCGCAGAGAUGAAAACCAUCACUUCCGGAGGCGCUUCAAGUACUGAGGAAUGUAGUAAAUACGUGCGUCGGUAUUGGUGAGCGCUGUCUGUGUG_GU______GUGUAU ......(((((((((((((.....)))).........(((((((..((((((((.(.(((((.....))))).).))))))))...))))))).)))))).)))............. (-37.06 = -37.73 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:52 2006