Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,582,951 – 3,583,058 |
Length | 107 |
Max. P | 0.874239 |
Location | 3,582,951 – 3,583,058 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.03 |
Mean single sequence MFE | -38.53 |
Consensus MFE | -21.19 |
Energy contribution | -20.19 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.32 |
Mean z-score | -1.78 |
Structure conservation index | 0.55 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3582951 107 + 22224390 GGCCCCCCCCCCCCCCAUUCAACCAUUUAUAACCCGCUUUUCUCUGCACUUCUUGUUGCAUC--GGGUGUACGGUGGC-U-AGCGGGGAAUGCGGGGUGGU---------UAUUGCACUU .((.....((((((.(((((............((((((..((.(((.((..((((......)--))).)).))).)).-.-))))))))))).)))).)).---------....)).... ( -34.40) >DroSec_CAF1 41873 89 + 1 GGCCC------------------CAUUUAUAGCCCGCUUUUCUCUGCACUUCUUGUUGCAUC--GGGUGUACGGGGGC-U-AGCGGGGAAUGUGGGGUGGU---------UAUUGCACUU .((((------------------(((......((((((..((((((.((..((((......)--))).)).)))))).-.-))))))....)))))))...---------.......... ( -34.50) >DroEre_CAF1 36599 107 + 1 AGCCC--------CUCUUUCAACCAUUUUUAAACCGCUUUUCCCUGCACUUCUCGUUGCAUC--UGGUGUGUGGU-UAGGGGGAGGGGGGAGUGGGGUGG--CUAGGGGGUAUUGCACUU .((((--------(.((....(((.........((((((..((((.(.(((((..(..(((.--....)))..).-.))))))))))..)))))))))..--..)))))))......... ( -41.20) >DroYak_CAF1 37644 108 + 1 G--UC--------CUCUUUCGACCAUUUUAAAACCGCUUUUCCCUGCACUUCUCGUUGCAUCGGUGGUGCGUGGG-GC-UGGGCGGGGAACGUGGGGUGGUGGUAGGGGGUACUGCACUU (--((--------(((((.(.(((((((((...((((((.((((((((((.(.((......))).)))))).)))-).-.))))))......))))))))).).)))))).))....... ( -44.00) >consensus GGCCC________CUCUUUCAACCAUUUAUAAACCGCUUUUCCCUGCACUUCUCGUUGCAUC__GGGUGUACGGG_GC_U_AGCGGGGAAUGUGGGGUGGU_________UAUUGCACUU .................................((((..((((((((....(((((.((((.....))))))))).......)))))))).))))((((................)))). (-21.19 = -20.19 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:47 2006