Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,581,467 – 3,581,579 |
Length | 112 |
Max. P | 0.596039 |
Location | 3,581,467 – 3,581,579 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.56 |
Mean single sequence MFE | -25.96 |
Consensus MFE | -16.57 |
Energy contribution | -18.26 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.12 |
Mean z-score | -1.64 |
Structure conservation index | 0.64 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3581467 112 + 22224390 UAAGUGACCCACAUUAAAUAUUUAUAAAUUAUCGA-------UAAUAUCGAUGAUUUGGUCGGAAUGGUUAUCGAUAAUAACUGAAUACUUUUUCAUCGUCUGCCAUAAUU-UUUGGGGG .......((((.............(((((((((((-------(...))))))))))))......(((((...(((.......((((......)))))))...)))))....-..)))).. ( -24.61) >DroSec_CAF1 39689 111 + 1 UAAGUGACCCACAUUAAAUAUUUAUAAAUUAUCGA-------UAGUAUCGAUGAUUUGGUCGGAAUGGUUAUCGAUGAUAACUGAAUACUUUUUCAUCGUCUGCCAUAAAA--UUGGGGG .......((((.............(((((((((((-------(...))))))))))))......(((((...((((((...............))))))...)))))....--.)))).. ( -28.86) >DroEre_CAF1 34930 109 + 1 UUAAUGACCCACAUUGAAUAUUUAUAAAUUAUCGA-------UAGUAUCGAUGUUUUGGUUA----GGUCAUCGAUGAUAACUGAAUACGUUUUCAUCGUCUGCCACAUUAUUUUGGGGG .......(((.((..(((((....((((.((((((-------(...))))))).))))....----(((...((((((.(((.......))).))))))...)))....)))))))))). ( -25.60) >DroYak_CAF1 36177 103 + 1 UUAAUGACCCACGCUAAAUGUUUAGAGGUAAUCCGUAUAUCGUAGUAUCGAUGUUUUGGUUA----GGCCAUCGAUGAUAACUAAGUACAUUCUCAUCGU-------------UUGGGGG .......((((.((..........(((((...(((.((((((......))))))..)))...----.))).))(((((...............)))))))-------------.)))).. ( -24.76) >consensus UAAAUGACCCACAUUAAAUAUUUAUAAAUUAUCGA_______UAGUAUCGAUGAUUUGGUCA____GGUCAUCGAUGAUAACUGAAUACUUUUUCAUCGUCUGCCAUAAUA__UUGGGGG .......((((.............(((((((((((............)))))))))))........(((...((((((...............))))))...))).........)))).. (-16.57 = -18.26 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:46 2006