Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 490,106 – 490,204 |
Length | 98 |
Max. P | 0.519617 |
Location | 490,106 – 490,204 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 75.99 |
Mean single sequence MFE | -28.73 |
Consensus MFE | -14.51 |
Energy contribution | -15.18 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.37 |
Mean z-score | -1.71 |
Structure conservation index | 0.51 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519617 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 490106 98 + 22224390 AGCAGUUCCAAGGAACUCAAUCUGCUGCUUAAGAUCCUCGCCCAAGGAGGCGAGAAGUGGCAGAAACUGCGUGAACAAAUUCAGCUCGUCGCCAAGGA .(.(((((....))))))..(((((..(((......((((((......)))))))))..)))))....((((((.(.......).))).)))...... ( -31.30) >DroSec_CAF1 3003 98 + 1 AGUAGUCCCAAGGAACUCAAUCUGCUGCUUAAGAUCCUCGCCCAAGGAGGCGAGAAGCGUCAGAAACUACGUGAACAGAUUCAGCUCGUCGCCAAAAA .(((((((...)))......((((.(((((......((((((......))))))))))).))))..))))((((...((......)).))))...... ( -26.20) >DroSim_CAF1 3276 98 + 1 AGUAGUCCCAAGGAACUCAAUCUGCUGCUUAAGAUCCUCGCCCAAGGAGGCGAGAAGCGUCAGAAACUGCGUGAACANNNNNNNNNNNNNNNNNNNNN .(((((((...)))......((((.(((((......((((((......))))))))))).))))..))))............................ ( -22.70) >DroEre_CAF1 3014 98 + 1 AGUAGUUCCAAGGAACUCAAUCUGCUGCUCAAGAUCCUCGCCCAAGGAAACCAGAAGAGGCAGAAACUGCGUGAAAAGAUCCAAAUCGUCGCUAAAAG .(.(((((....))))))..((((((..((....((((......)))).....))...))))))......((((...(((....))).))))...... ( -21.60) >DroYak_CAF1 3026 98 + 1 AGUAGUUCCAAGGAACUCAAUCUGCUGCUCAAGAUCCUCGCCCAAGGAGGCCAGAAGCGGCAGAAACUGCGCGAAAAGAUCCAACUCGUCGCUAAGAA .(.(((((....))))))..(((((((((......((((.......)))).....)))))))))..((..((((..((......))..))))..)).. ( -31.30) >DroAna_CAF1 3468 98 + 1 AGCAGUCCCAAGGAGCUGCAGUUGCUCCAGAAGAUUCUGGCCCAGGGCGGCGCCAAGCGGGCCCAGCUCCUGGAAAAGGUCAAGGUGCUGGCCAAGAA .((((..(....)..)))).......(((((....))))).(((((((((.(((.....))))).)).)))))....(((((......)))))..... ( -39.30) >consensus AGUAGUCCCAAGGAACUCAAUCUGCUGCUUAAGAUCCUCGCCCAAGGAGGCGAGAAGCGGCAGAAACUGCGUGAAAAGAUCCAGCUCGUCGCCAAGAA .(((((.(....).......(((((((((.....((((......)))).......))))))))).)))))............................ (-14.51 = -15.18 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:45 2006