Locus 120

Sequence ID X_DroMel_CAF1
Location 490,106 – 490,204
Length 98
Max. P 0.519617
window157

overview

Window 7

Location 490,106 – 490,204
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 75.99
Mean single sequence MFE -28.73
Consensus MFE -14.51
Energy contribution -15.18
Covariance contribution 0.67
Combinations/Pair 1.37
Mean z-score -1.71
Structure conservation index 0.51
SVM decision value -0.03
SVM RNA-class probability 0.519617
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 490106 98 + 22224390
AGCAGUUCCAAGGAACUCAAUCUGCUGCUUAAGAUCCUCGCCCAAGGAGGCGAGAAGUGGCAGAAACUGCGUGAACAAAUUCAGCUCGUCGCCAAGGA
.(.(((((....))))))..(((((..(((......((((((......)))))))))..)))))....((((((.(.......).))).)))...... ( -31.30)
>DroSec_CAF1 3003 98 + 1
AGUAGUCCCAAGGAACUCAAUCUGCUGCUUAAGAUCCUCGCCCAAGGAGGCGAGAAGCGUCAGAAACUACGUGAACAGAUUCAGCUCGUCGCCAAAAA
.(((((((...)))......((((.(((((......((((((......))))))))))).))))..))))((((...((......)).))))...... ( -26.20)
>DroSim_CAF1 3276 98 + 1
AGUAGUCCCAAGGAACUCAAUCUGCUGCUUAAGAUCCUCGCCCAAGGAGGCGAGAAGCGUCAGAAACUGCGUGAACANNNNNNNNNNNNNNNNNNNNN
.(((((((...)))......((((.(((((......((((((......))))))))))).))))..))))............................ ( -22.70)
>DroEre_CAF1 3014 98 + 1
AGUAGUUCCAAGGAACUCAAUCUGCUGCUCAAGAUCCUCGCCCAAGGAAACCAGAAGAGGCAGAAACUGCGUGAAAAGAUCCAAAUCGUCGCUAAAAG
.(.(((((....))))))..((((((..((....((((......)))).....))...))))))......((((...(((....))).))))...... ( -21.60)
>DroYak_CAF1 3026 98 + 1
AGUAGUUCCAAGGAACUCAAUCUGCUGCUCAAGAUCCUCGCCCAAGGAGGCCAGAAGCGGCAGAAACUGCGCGAAAAGAUCCAACUCGUCGCUAAGAA
.(.(((((....))))))..(((((((((......((((.......)))).....)))))))))..((..((((..((......))..))))..)).. ( -31.30)
>DroAna_CAF1 3468 98 + 1
AGCAGUCCCAAGGAGCUGCAGUUGCUCCAGAAGAUUCUGGCCCAGGGCGGCGCCAAGCGGGCCCAGCUCCUGGAAAAGGUCAAGGUGCUGGCCAAGAA
.((((..(....)..)))).......(((((....))))).(((((((((.(((.....))))).)).)))))....(((((......)))))..... ( -39.30)
>consensus
AGUAGUCCCAAGGAACUCAAUCUGCUGCUUAAGAUCCUCGCCCAAGGAGGCGAGAAGCGGCAGAAACUGCGUGAAAAGAUCCAGCUCGUCGCCAAGAA
.(((((.(....).......(((((((((.....((((......)))).......))))))))).)))))............................ (-14.51 = -15.18 +   0.67) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:45 2006