Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,580,024 – 3,580,133 |
Length | 109 |
Max. P | 0.995588 |
Location | 3,580,024 – 3,580,133 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 95.63 |
Mean single sequence MFE | -28.84 |
Consensus MFE | -24.19 |
Energy contribution | -24.23 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.64 |
Structure conservation index | 0.84 |
SVM decision value | 2.59 |
SVM RNA-class probability | 0.995588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3580024 109 - 22224390 GCCACGGAAAGUGAGAAGGUGGAAAAAAUACAGAGGGCGGUGAAAA--CAGAGCUCUCUUGCCAUCAGUUCCUCUUCUAUUUUCACCAAAAUAUAACAAAAGGCAAAAAG-A (((...((((((.((((((.((((.......(((((((.((....)--)...))))))).........)))))))))))))))).................)))......-. ( -29.14) >DroSec_CAF1 38410 109 - 1 GCCACGGAAAGUGAGAAGGUGGAA-AAAUACAGAGGGCGGUGAAAA--CAGAGCUCUCUUGCCAUCAGUUCCUCUUCUAUUUUCACCAAAAUAUAACAAAAGGCAAAAAGGA (((...((((((.((((((.((((-......(((((((.((....)--)...))))))).........)))))))))))))))).................)))........ ( -28.71) >DroSim_CAF1 26768 109 - 1 GCCACGGAAAGUGAGAAGGUGGAA-AAAUACAGAGGGCGGUGAAAA--CAGAGCUCUCUUGCCAUCAGUUCCUCUUCUAUUUUCACCAAAAUAUAACAAAAGGCAAAAAGGA (((...((((((.((((((.((((-......(((((((.((....)--)...))))))).........)))))))))))))))).................)))........ ( -28.71) >DroEre_CAF1 33324 110 - 1 GCCACGGAAAGUGAGAAGGUGGAA-AAAUGCAGAGGGCGGUGAAAAUACAGAGCUCUCUUUCCAUCAGUUCCUCUUCUAUUUUCACCGAAAUAUAACAAAAGGGAAAAAG-A ..(((.....)))((((((.((((-..(((.(((((((..((......))..)))))))...)))...)))))))))).(((((.((..............)))))))..-. ( -28.94) >DroYak_CAF1 34540 108 - 1 GCCACGGAAAGUGAGAAGGUGGAA-AAAUACAGAGGGUGGUGAAAA--CAGAGCUCUCUUUCCAUCAGUUCCUCUUGUAUUUUCACCGAAAUAUAACAAAAGGGAAAAAG-A ..(((.....)))....(((((((-......(((((((.((....)--)...))))))))))))))..(((((.(((((((((....)))))))))....))))).....-. ( -28.70) >consensus GCCACGGAAAGUGAGAAGGUGGAA_AAAUACAGAGGGCGGUGAAAA__CAGAGCUCUCUUGCCAUCAGUUCCUCUUCUAUUUUCACCAAAAUAUAACAAAAGGCAAAAAG_A ......((((((.((((((.((((.......(((((((..((......))..))))))).........))))))))))))))))............................ (-24.19 = -24.23 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:41 2006