Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,569,566 – 3,569,767 |
Length | 201 |
Max. P | 0.923794 |
Location | 3,569,566 – 3,569,677 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.43 |
Mean single sequence MFE | -47.94 |
Consensus MFE | -38.08 |
Energy contribution | -38.40 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.07 |
Mean z-score | -2.00 |
Structure conservation index | 0.79 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3569566 111 - 22224390 CAACUGCCGGUGAACGUCGCCAAAAACGCAGCUUCGACGUCCUCUGUCGCUGCCUCUACCGCAGCCGCUGCUGGCGUCGACUGCGGCAGCGAGGUCUCGC---------UGCCGAAAAGC ........((((.....))))......((((..((((((((..(.((.(((((.......))))).)).)..))))))))))))((((((((....))))---------))))....... ( -50.30) >DroSec_CAF1 25798 111 - 1 CAACUGCCGGUGAACGUCGCCAAAAACGCAGCUUCGACGUCCUCUGUCGCUGCCUCUACCGCAGCCGCUGCUGACGUUGACUGCGGCAGCGAGACCUCGC---------UGCCGAAAAGC .......((((.(((((((........(((((...((((.....))))(((((.......))))).)))))))))))).))))(((((((((....))))---------)))))...... ( -49.20) >DroSim_CAF1 23157 111 - 1 CAACUGCCGGUGAACGUCGCCAAAAACGCAGCUUCGACGUCCUCUGUCGCUGCCUCUACCGCAGCCGCUGCUGACGUUGACUGCGGCAGCGAGGUUUCGC---------UGCCGAAAAGC .......((((.(((((((........(((((...((((.....))))(((((.......))))).)))))))))))).))))((((((((......)))---------)))))...... ( -47.90) >DroEre_CAF1 25568 120 - 1 CAACUGCCGGUGAACGUCGCCAAAAACGCAGCUUCGUCUUCCUCUGUCGCUGCCUCUGCCGCAGCCGCUGCUGGCGUCGACUGCGGCAGCGUGGUCUCGCGAAUGCUGCCGCCGAAAAGC .....(((((((.....))))......(((((...(.(.......).)(((((.......))))).))))).))).(((...((((((((((.(.....)..)))))))))))))..... ( -46.50) >DroYak_CAF1 27124 118 - 1 CAACUGCCGGUGAACGUCGCCAAAAACGCAGCUUCGUCUUCCUCAGUCGCUGCCUCUGCCGCAGCCGCUGCUGGCGUCGACUGCGGCAGCUGGGUUUCGCGAAUGCUGC--CCGAAAAGC ...(((((((((.....))))......(((((..((((.....((((.(((((.......))))).))))..))))..).))))))))).(((((...((....)).))--)))...... ( -45.80) >consensus CAACUGCCGGUGAACGUCGCCAAAAACGCAGCUUCGACGUCCUCUGUCGCUGCCUCUACCGCAGCCGCUGCUGGCGUCGACUGCGGCAGCGAGGUCUCGC_________UGCCGAAAAGC ...(((((((((.....))))......((((..((((((((..(.((.(((((.......))))).)).)..)))))))))))))))))............................... (-38.08 = -38.40 + 0.32)
Location | 3,569,677 – 3,569,767 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 91.47 |
Mean single sequence MFE | -22.30 |
Consensus MFE | -16.80 |
Energy contribution | -18.36 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.86 |
Structure conservation index | 0.75 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3569677 90 - 22224390 --GUUGUUUUUGUUGUUGUUGCUUAGAAGGCGAAAAAUCGGAAAAGACAAACAGGACAACUGCGAUAAACGACAACGAGAACGAACCGCUUA --.((((((((((((((((((((.....))).....(((((......)...(((.....))))))).)))))))))))))))))........ ( -24.80) >DroSec_CAF1 25909 90 - 1 --GCUGUUUUUGUUGUUGUUGCUUAGAAGGCGAAAAAUCGGAAAAGGCAAACAGGACAACUGCGAUAAACGACAACGAGAACGAACCGCUUA --(((((((((((((((((((((.....))).....(((((......)...(((.....))))))).))))))))))))))))....))... ( -23.70) >DroSim_CAF1 23268 90 - 1 --GCUGUUUUUGUUGUUGUUGCUUAGAAGGCGAAAAAUCGGAAAAGACAAACAGGACAACUGCGAUAAACGACAACGAGAACGAACCGCUUA --(((((((((((((((((((((.....))).....(((((......)...(((.....))))))).))))))))))))))))....))... ( -23.50) >DroEre_CAF1 25688 83 - 1 UU---------GUUGUUGCUGUUUAGAAGGCGAAAACUCGGAAAAGACAAACAGGACAACUGCGAUAAACGACAACGAGAACGAACCGCUUA ((---------.((((((.((((((...(.(((....)))...........(((.....))))..)))))).)))))).))........... ( -14.00) >DroYak_CAF1 27242 92 - 1 CUGCUGUUGGUGUUGUUGUUGUUUAGAAGGCGAAAACUCGGAAAAGACAAACAGGACAACUGCGAUAAACGACAACGAGAACGAACCGCUUA ..((.(((.((.(((((((((((((...(.(((....)))...........(((.....))))..)))))))))))))..)).))).))... ( -25.50) >consensus __GCUGUUUUUGUUGUUGUUGCUUAGAAGGCGAAAAAUCGGAAAAGACAAACAGGACAACUGCGAUAAACGACAACGAGAACGAACCGCUUA .....((((((((((((((((((.....)))....................(((.....))).....))))))))))))))).......... (-16.80 = -18.36 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:40 2006