| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,568,696 – 3,568,804 |
| Length | 108 |
| Max. P | 0.989916 |
| Location | 3,568,696 – 3,568,804 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 72.33 |
| Mean single sequence MFE | -23.56 |
| Consensus MFE | -9.58 |
| Energy contribution | -10.34 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.41 |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.989916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3568696 108 + 22224390 GUCUGUUACCUGUAAAAUUUGUUACUAGCCAUAUCUGGUGAUAA-AUGUACAA-GCAUUGCUAUUUCGCUGACUGCGAAAUGCUUUUCAAAUAUCGGCGGCCCAUAACGA ....((..((((((..((((((((((((......))))))))))-)).)))).-.....((.(((((((.....)))))))))............))..))......... ( -27.70) >DroSec_CAF1 24960 102 + 1 ------UACCUGUAAAAUUUGUUACUAGCCAUAUCUGGUGAUAA-AUGUACAA-GCAUUGCUAUUUCGCUGACUGCGAAAUGCUUUUCAAAUAUCGGCGGCCCAUAACGA ------..((((((..((((((((((((......))))))))))-)).)))).-.....((.(((((((.....)))))))))............))((........)). ( -24.90) >DroSim_CAF1 22326 102 + 1 ------UACCUGUAGAAUUUGUUACUAGCCAUAUCUAGUGAUAA-AUGUACAA-GCAUUGCUAAUUCGCUGACUGCCAAAUGCCUUUUAAAUAACCGCCGCCCAUUACGA ------....((((..((((((((((((......))))))))))-)).)))).-(((((((.............))..)))))........................... ( -17.92) >DroEre_CAF1 24750 81 + 1 ------UAACA-UCAAAUUUGCUAUU------AUCUGGUGAUA-------------UUUACUAUGCGGUUGACCGCGAAAUACUUUUCAAAUAUCGGC---ACAUAAUAU ------.....-..........((((------((.((.(((((-------------(((.....((((....))))((((....)))))))))))).)---).)))))). ( -21.10) >DroYak_CAF1 26293 100 + 1 ------UAACU-UCAGAUUUGCUAUCAGGCAAAUCUGGUGUUAAGAUGUAUAAAUCAUUUCUAUUUUGCUGACCGCGAAAUACUUUUCAAAUAUCGGC---ACUAAUUAA ------((((.-(((((((((((....))))))))))).)))).(((......)))..........((((((....((((....)))).....)))))---)........ ( -26.20) >consensus ______UACCUGUAAAAUUUGUUACUAGCCAUAUCUGGUGAUAA_AUGUACAA_GCAUUGCUAUUUCGCUGACUGCGAAAUGCUUUUCAAAUAUCGGC_GCCCAUAACGA ...................(((((((((......)))))))))..................((((((((.....))))))))............................ ( -9.58 = -10.34 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:39 2006