Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,565,696 – 3,565,799 |
Length | 103 |
Max. P | 0.916856 |
Location | 3,565,696 – 3,565,799 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 75.97 |
Mean single sequence MFE | -19.74 |
Consensus MFE | -6.02 |
Energy contribution | -7.72 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.21 |
Mean z-score | -2.89 |
Structure conservation index | 0.30 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3565696 103 - 22224390 AAAAAAAUAUUCACAAUAUUCACACGAACGCAC-AC-ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUAAAA--AAAAUACCGAAACGAGUGUGCAAAG-A .............................((((-((-.((((....))....................(((((((....--...)))))))..)).))))))....-. ( -19.10) >DroVir_CAF1 37811 83 - 1 AAAAAAAGUUUAGCAGAAGCUACACAAACGCGUCGCGUUGCAAAAAUGUGCUAAAAA-------------------------AUGCGCUCAGCUGUCGCAAGAGUAGG .......((.((((....)))).)).(((((...)))))........((((......-------------------------..))))....(((((....)).))). ( -17.90) >DroSec_CAF1 21988 103 - 1 AAAAAAAUAUUCACAAUAUUCACACGAACGCAC-AC-ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUAAAA--AAAAUACCGAAACGAGUGUGCAAAG-A .............................((((-((-.((((....))....................(((((((....--...)))))))..)).))))))....-. ( -19.10) >DroSim_CAF1 18775 104 - 1 AAAAAAAUAUUCACAAUAUUCACACGAACGCAC-AC-ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUAAAA-AAAAAUACCGAAACGAGUGUGCAAAG-A .............................((((-((-.((((....))....................(((((((....-....)))))))..)).))))))....-. ( -19.40) >DroEre_CAF1 21752 104 - 1 AAA-AAAUAUUCACAAUAUUCACACGAACGCAC-AC-ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUUAAACAAAAAUACCAAAUUGUGUGUGCAAAG-A ...-.........................((((-((-((((((..................))))...((((((((.......))))))))...))))))))....-. ( -23.47) >DroYak_CAF1 23372 102 - 1 AAA-AAAUAUUCACAAUAUUCACACGAACGCAC-AC-ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUAGGUAUUAAA--AAAAUACCAAAUCGUGUGCGCAAAG-A ...-........................(((((-((-..((((..................)))).....((((((...--..)))))).....))))))).....-. ( -19.47) >consensus AAAAAAAUAUUCACAAUAUUCACACGAACGCAC_AC_ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUAAAA__AAAAUACCGAAACGAGUGUGCAAAG_A ....................(((((....((........))...........................(((((((.........))))))).....)))))....... ( -6.02 = -7.72 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:36 2006