Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,557,571 – 3,557,661 |
Length | 90 |
Max. P | 0.904901 |
Location | 3,557,571 – 3,557,661 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 94.43 |
Mean single sequence MFE | -17.86 |
Consensus MFE | -15.86 |
Energy contribution | -16.06 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.89 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3557571 90 + 22224390 AAUCAAUUUUUUACUCGAGAGAG-CGCAAAAAUAGAAGGCUUAAAAUUGGACGGCGAA-AAACUUCCCACACCCAGGCUGAGUCAAUUGAAU ..((((((.....(((....)))-.............((((((...((((..((.(((-....)))))....))))..)))))))))))).. ( -19.00) >DroSec_CAF1 13188 88 + 1 AAUCAAUUUUUUACUCGAGAGAG-CGCAA--AUAAAAGGCUUAAAAUUGGACGGCGAA-AAACUUCCCACACCCAUGCUGAGUCAAUUGAAU ..((((((.....(((....)))-.....--......((((((..((.((..((.(((-....)))))...)).))..)))))))))))).. ( -18.00) >DroSim_CAF1 11263 88 + 1 AAUCAAUUUUUUACUCGAGAGAG-CGCAA--AUAAAAGGCUUAAAAUUGGACGGCGAA-AAACUUCCCACACCCAUGCUGAGUCAAUUGAAU ..((((((.....(((....)))-.....--......((((((..((.((..((.(((-....)))))...)).))..)))))))))))).. ( -18.00) >DroEre_CAF1 13357 89 + 1 AAUCAAUU-UUUACUCGCGAGAGCCGCAA--AUAAAAGGCUUAAAAUUGGACGGAGAAAAAACUUCCCACACCCAUGCUGAGUCAAUUGAAU ..((((((-...(((((((.(((((....--......))))).....(((..((.(((.....)))))....)))))).)))).)))))).. ( -20.00) >DroYak_CAF1 14762 88 + 1 AAUCAAUU-UUUACUCGAGAGAG-CGCAA--GUAAAAGGCUUAAAAUUGAACGGAGAAAAAACUUCCCACACCCAUGCUGAGUCAAUUGAAU ..((((((-....(((....)))-.....--......((((((..((.(...((.(((.....)))))....).))..)))))))))))).. ( -14.30) >consensus AAUCAAUUUUUUACUCGAGAGAG_CGCAA__AUAAAAGGCUUAAAAUUGGACGGCGAA_AAACUUCCCACACCCAUGCUGAGUCAAUUGAAU ..((((((.....(((....)))..............((((((....(((..((.(((.....)))))....)))...)))))))))))).. (-15.86 = -16.06 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:31 2006