Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,557,350 – 3,557,455 |
Length | 105 |
Max. P | 0.856395 |
Location | 3,557,350 – 3,557,455 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 86.34 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -25.32 |
Energy contribution | -25.38 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.94 |
Structure conservation index | 0.79 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.856395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3557350 105 + 22224390 UUUUUGCUUUUCUA-GCUGCCAUUCAGUUUGACGCGU---CGGUGGAAAAGUGGAAAAUUGAAUGGAAAGCGGGCGGGCAGGCAGGCAGCACUGCUGC-UAUGUCGAAUG ....((((..(((.-(((.(((((((((((..(((.(---(....))...)))..)))))))))))..))))))..))))((((((((((...)))))-).))))..... ( -41.50) >DroSec_CAF1 12979 96 + 1 AUUUUGCUUUUCUA-GCUGCCAUUCAGUUUGACGCGGCGGCGGUGGAAAAGUGGAAAAUUGAAUGGAAAGCGGGCAGGCAG-------------CUGCGUAUGUCGAAUG .(((..((((((((-((((((..((.....))...))))))..))))))))..)))..((((.......((((........-------------)))).....))))... ( -29.10) >DroSim_CAF1 11054 96 + 1 AUUUUGCUUUUCUA-GCUGCCAUUCAGUUUGACGCGGCGGCGGUGGAAAAGUGGAAAAUUGAAUGGAAAGCGGGCAGGCAG-------------CUGCGUAUGUCGAAUG .(((..((((((((-((((((..((.....))...))))))..))))))))..)))..((((.......((((........-------------)))).....))))... ( -29.10) >DroYak_CAF1 14555 94 + 1 AUGUAGCUUAUCUAGGCUGCCAUUCAGUUUGACGCGG---CGCUGGAAAAGUGGAAAAUUGAAUGAAAAGCGGGCAGGCAG-------------CUGCGGAUGUCGAAUG .(((((((..(((.(.((((((((((((((..(((..---..........)))..))))))))))....)))).)))).))-------------)))))........... ( -29.10) >consensus AUUUUGCUUUUCUA_GCUGCCAUUCAGUUUGACGCGG___CGGUGGAAAAGUGGAAAAUUGAAUGGAAAGCGGGCAGGCAG_____________CUGCGUAUGUCGAAUG ...............(((.(((((((((((..(((...............)))..)))))))))))..))).((((.((((.............))))...))))..... (-25.32 = -25.38 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:30 2006