Locus 1191

Sequence ID X_DroMel_CAF1
Location 3,556,802 – 3,556,893
Length 91
Max. P 0.723682
window1912

overview

Window 2

Location 3,556,802 – 3,556,893
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 90.72
Mean single sequence MFE -20.60
Consensus MFE -15.54
Energy contribution -15.38
Covariance contribution -0.16
Combinations/Pair 1.15
Mean z-score -1.83
Structure conservation index 0.75
SVM decision value 0.41
SVM RNA-class probability 0.723682
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3556802 91 + 22224390
CGUUUUUAUUUGCUCACUGCGUCGUCAUCGAUUGCAAUAAAUUGAGGAAUUGAAUACGGACGCAUUGAGGGAAUAUAUAUGUUUUCCAUAA
(((...(((((.((((.((((((((..((((((.(..........).))))))..)).)))))).)))).)))))...))).......... ( -25.20)
>DroSec_CAF1 12465 83 + 1
CGUUUUUAUUUGCUCACUGCG---UCAUCGAUUGCAGUAAAUUGAGGAAUUGAAUACG-ACGCAUUGGGGGAAUAUA----UUCUCCAUAA
(((.((((.((.(((((((((---........)))))).....))).)).)))).)))-......(((((((.....----)))))))... ( -21.60)
>DroSim_CAF1 10536 83 + 1
CGUUUUUAUUUGCUCACUGCG---UCAUCGAUUGCAGUAAAUUGAGGAAUUGAAUACG-ACGCAUUGGGGGAAUAUA----UUCUCCAUAA
(((.((((.((.(((((((((---........)))))).....))).)).)))).)))-......(((((((.....----)))))))... ( -21.60)
>DroEre_CAF1 12617 83 + 1
AGUUUUUAUGUGCUUACUGCG---UCAUCGAUUGCAAUAAAUUGGGGAAUUGAAUACG-ACGAAUUGAGGGAAUAUA----UUCUCCAUAA
............((((...((---((.((((((.(..........).))))))....)-)))...))))(((.....----...))).... ( -12.60)
>DroYak_CAF1 14031 83 + 1
CGUUUUUAUUUGCUCACUGCG---UCAUCGAUUGCAAUAAAUUGAGGAAUUGAAUACG-ACGCAAUGAGGAAAUAUA----UUCUACAUAA
......(((((.((((.((((---((.((((((.(..........).))))))....)-))))).)))).)))))..----.......... ( -22.00)
>consensus
CGUUUUUAUUUGCUCACUGCG___UCAUCGAUUGCAAUAAAUUGAGGAAUUGAAUACG_ACGCAUUGAGGGAAUAUA____UUCUCCAUAA
......(((((.((((.((((......((((((.(..........).)))))).......)))).)))).)))))................ (-15.54 = -15.38 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:29 2006