Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,554,775 – 3,554,919 |
Length | 144 |
Max. P | 0.927505 |
Location | 3,554,775 – 3,554,880 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 80.30 |
Mean single sequence MFE | -26.56 |
Consensus MFE | -19.83 |
Energy contribution | -19.71 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -2.03 |
Structure conservation index | 0.75 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3554775 105 - 22224390 UCUA--UAUAUCUGCUUGACUGCUAGGUUUUUCUCUGGCUUCUAAAUGGAGUGACACACGAACUGA-----GUCACUUUUAUAUUGAAGUGCUGAUAAGUAC--GCUUAUCUAU ....--...((((((......)).)))).........(((((.....((((((((.((.....)).-----))))))))......)))))...((((((...--.))))))... ( -23.90) >DroSec_CAF1 10499 86 - 1 --------UAUCUGCUUGGC-----------GCACUGGCUUCUAAAUGGAGUGACACACGAACUGA-----GUCACUUCU--AUCGAAGUGGUGAUAAGUGC--GCUUAUCUAU --------.........(((-----------(((((.(((((.....((((((((.((.....)).-----)))))))).--...))))).......)))))--)))....... ( -27.70) >DroSim_CAF1 8586 86 - 1 --------UAUCUGCUUGGC-----------GCUCUGGCUUCUAAAUGGAGUGACACACGAACUGA-----GUCACUUCU--AUCGAAGUGGUGAUAAGUGC--GCUUAUCUAU --------.........(((-----------((.((.(((((.....((((((((.((.....)).-----)))))))).--...))))).......)).))--)))....... ( -23.70) >DroEre_CAF1 10575 94 - 1 UACAAGUAUAUUUGCUUGGC-------------UCUGCCUUCUAAGUGGAGUGACACACGUACUGA-----GUCACUUCU--AUCGAAGUGAUGAUAAGUGCGCGCUUAUCUAU ..((((((....))))))((-------------((..(.......)..))))....(.((((((..-----((((((((.--...))))))))....)))))).)......... ( -31.60) >DroYak_CAF1 12016 90 - 1 -------AUAUCUGCUUGAC-------------UCGGGCUUCUAAAUGGAGUGACACACGUACUGAGUUGAGUCACUCCU--AUCGAAGUGGUGAUAAGUGC--GCUUAUCUAU -------......(((..((-------------(((((((((.....))))).((....)).))))))..)))((((.(.--...).))))..((((((...--.))))))... ( -25.90) >consensus _______AUAUCUGCUUGGC____________CUCUGGCUUCUAAAUGGAGUGACACACGAACUGA_____GUCACUUCU__AUCGAAGUGGUGAUAAGUGC__GCUUAUCUAU .....................................(((((.....((((((((................))))))))......)))))...(((((((....)))))))... (-19.83 = -19.71 + -0.12)
Location | 3,554,807 – 3,554,919 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -25.75 |
Consensus MFE | -13.71 |
Energy contribution | -13.39 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.14 |
Mean z-score | -2.16 |
Structure conservation index | 0.53 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3554807 112 - 22224390 UUCGCCUGUCCACUGUCAGUGUGUUCACAUAAAUAUAUAUCUA--UAUAUCUGCUUGACUGCUAGGUUUUUCUCUGGCUUCUAAAUGGAGUGACACACGAACUGA-----GUCACUUUU ........((((..(((((((....)))....((((((....)--))))).....)))).((((((......)))))).......))))(((((.((.....)).-----))))).... ( -23.40) >DroSec_CAF1 10529 91 - 1 UCCGCCUGUCUACUGUCAGUGUGUUUACAUAAAUA------------UAUCUGCUUGGC-----------GCACUGGCUUCUAAAUGGAGUGACACACGAACUGA-----GUCACUUCU ..............(((((((((((..........------------.........)))-----------))))))))........((((((((.((.....)).-----)))))))). ( -25.51) >DroSim_CAF1 8616 91 - 1 UCCGCCUGUCCACUGUCAGUGUGUUUACAUAAAUA------------UAUCUGCUUGGC-----------GCUCUGGCUUCUAAAUGGAGUGACACACGAACUGA-----GUCACUUCU ...(((.(((((..(.((((((((((....)))))------------)).)))).))).-----------))...)))........((((((((.((.....)).-----)))))))). ( -25.40) >DroEre_CAF1 10607 100 - 1 UUCGCCUGUCCACU-UCAGUGUGUUUACAUAAAUACAUAUACAAGUAUAUUUGCUUGGC-------------UCUGCCUUCUAAGUGGAGUGACACACGUACUGA-----GUCACUUCU ........((((((-(..((((((((....))))))))...((((((....))))))..-------------..........)))))))(((((.((.....)).-----))))).... ( -26.50) >DroYak_CAF1 12046 93 - 1 UUCGCCUGUCCACU-UCAGUGUGUUUACAUAAAU------------AUAUCUGCUUGAC-------------UCGGGCUUCUAAAUGGAGUGACACACGUACUGAGUUGAGUCACUCCU ...(((((......-.((((((((((....))))------------))).)))......-------------.)))))........((((((((.(((.......).)).)))))))). ( -27.94) >consensus UUCGCCUGUCCACUGUCAGUGUGUUUACAUAAAUA___________AUAUCUGCUUGGC____________CUCUGGCUUCUAAAUGGAGUGACACACGAACUGA_____GUCACUUCU ..((((((........))).)))...............................................................((((((((................)))))))). (-13.71 = -13.39 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:28 2006