Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 485,865 – 485,956 |
Length | 91 |
Max. P | 0.708497 |
Location | 485,865 – 485,956 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 83.27 |
Mean single sequence MFE | -39.37 |
Consensus MFE | -24.34 |
Energy contribution | -24.57 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.09 |
Mean z-score | -2.39 |
Structure conservation index | 0.62 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 485865 91 - 22224390 ACAAGGUCCCCCCUAACCCGACUCACAGUGCAGUUGGGACGCGGGCCCUGCCCUUUUCCUCGUCAGAAUUCGCCAAGGGCAGGGACACCUC--- ...((((..(((....((((((((.....).)))))))....)))((((((((((.....((........))..))))))))))..)))).--- ( -35.20) >DroSec_CAF1 3628 87 - 1 ACAAGGUCGCC----ACCCGACUCGCAGUGCAGUUGGGACGCGUGCCCUGGGCAG-AAUUCGCCAGAAUUCGCCAGGGGUAGGGAC--CUCGUG ((.(((((.((----.(((((((.((...))))))))).....((((((.(((.(-(((((....))))))))).)))))))))))--)).)). ( -43.80) >DroSim_CAF1 3438 87 - 1 ACAAGGUCGCC----ACCCGACUCGCAGUGCAGUUGGGACGCGUGCCCUGGGCAU-UCCUCGCCAGAAUUCGCCAGGGGCAGGGAC--CUCGUG ((.(((((.((----.(((((((.((...))))))))).....((((((.(((((-((.......))))..))).)))))))))))--)).)). ( -39.10) >consensus ACAAGGUCGCC____ACCCGACUCGCAGUGCAGUUGGGACGCGUGCCCUGGGCAU_UCCUCGCCAGAAUUCGCCAGGGGCAGGGAC__CUCGUG .....(((.((.....(((((((........)))))))......(((((.(((......((....))....))).))))).)))))........ (-24.34 = -24.57 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:44 2006