Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,542,150 – 3,542,269 |
Length | 119 |
Max. P | 0.581436 |
Location | 3,542,150 – 3,542,269 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.20 |
Mean single sequence MFE | -37.76 |
Consensus MFE | -29.44 |
Energy contribution | -30.80 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.06 |
Mean z-score | -1.53 |
Structure conservation index | 0.78 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581436 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3542150 119 - 22224390 UAUUUUGCUUCCGUUUCGAUGCGGUAAUAUAUAAGUUGUCGACUGGUUGCGACGACAUCGUUU-UGCUGGGUAGAAAAUCGCAGUGGAAACGCAGUUUUCCCGUUCGCUAAUCGACGACA ..........((((......))))..........((((((((.(((((((((((....))(((-(((...))))))..)))))(((....))).............)))).)))))))). ( -32.90) >DroSec_CAF1 50223 116 - 1 GCUUUUGCUGCCGUUUCGAUGCGGUAAUAUGCAAGUUGUCGACUGGUUGCG---ACAUCGUUU-UGCUGGAUGGAAAAUCGCAGUGGAAACGCAGUUUUCCCGUUCGCUAAUCGACGACA ....((((((((((......))))))....))))((((((((.((((.(((---(.......)-))).(((((((((((.((.((....)))).))))).)))))))))).)))))))). ( -40.60) >DroSim_CAF1 51806 119 - 1 GAUUUUGCUGCCGUUUCGAUGCGGUAAUAUGCAAGUUGUCGACUGGUUGCGACGACAUCGUUU-UGCUGGAUGGAAAAUCGCAGUGGAAACGCAGUUUUCCCGUUCGCUAAUCGACGACA ....((((((((((......))))))....))))((((((((.((((.((((((....)))).-.)).(((((((((((.((.((....)))).))))).)))))))))).)))))))). ( -42.70) >DroEre_CAF1 54516 119 - 1 GAUUUUGCUGCCGUUUCGAUGCGGCAAUAAGUAAGUUUUCGACUGGUUGCGAUGACAUCGUUUCUGCUGGCUGGAAAAUCG-AGUGGAAACGCAGUUUUCCCGUUCGCUAAUCAACGACA ...((((.((((((......)))))).))))...(((.(((.(.....)))).))).(((((...((..((.(((((((..-.(((....))).))))))).))..)).....))))).. ( -34.90) >DroYak_CAF1 50137 118 - 1 GAUUUUUCUGCCGUUUCGAUGCGGUAAUAUGUAAGUUGUCGACUGGUUGCGACGACAUCGUUU-UGGUGGCAGGAAAAUCG-AGUGAAAACGCAGUUUUCCCGUUCGCUAAUCAACGACA ........((((((......))))))........(((((((.(.....)))))))).((((((-(((((((.(((((((.(-.((....)).).))))))).).)))))))..))))).. ( -37.70) >consensus GAUUUUGCUGCCGUUUCGAUGCGGUAAUAUGUAAGUUGUCGACUGGUUGCGACGACAUCGUUU_UGCUGGAUGGAAAAUCGCAGUGGAAACGCAGUUUUCCCGUUCGCUAAUCGACGACA ........((((((......))))))........((((((((.((((.((((((....)))...........(((((((....(((....))).))))))))))..)))).)))))))). (-29.44 = -30.80 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:27 2006