Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,527,704 – 3,527,799 |
Length | 95 |
Max. P | 0.995489 |
Location | 3,527,704 – 3,527,799 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 72.86 |
Mean single sequence MFE | -27.48 |
Consensus MFE | -11.48 |
Energy contribution | -13.02 |
Covariance contribution | 1.54 |
Combinations/Pair | 1.00 |
Mean z-score | -2.82 |
Structure conservation index | 0.42 |
SVM decision value | 2.58 |
SVM RNA-class probability | 0.995489 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3527704 95 + 22224390 GG----AGGGGGUGGUGGUGC-UGGGGGCUUAAAUGCAUAAAGCAAAGCGAAAAUUAUGCAUG-AAAUGUGGCAUAAAAGUUG-------CAUAUCGUUGCCUCCGCA ..----.((((((..((((((-(....((......))....)))...((((...((((((...-.......))))))...)))-------)..))))..))))))... ( -31.70) >DroSec_CAF1 35959 89 + 1 G-----GGGAGGU----GUGC-UGGGGGCUUAAAUGCAUA-AGCAAAGCGAAAAUUAUGCAUG-AAAUGUGGCAUAAAAGUUG-------CAUAUCGUUGCCUCCGCA (-----.((((((----.(((-(....(((((......))-)))..))))..........(((-(.(((..((......))..-------))).)))).)))))).). ( -30.40) >DroSim_CAF1 37184 91 + 1 GG----GGGAGGU----GUGC-UGGGGGCUUAAAUGCAUAAAGCAAAGCGAAAAUUAUGCAUG-AAAUGUGGCAUAAAAGUUG-------CAUAUCGUUGCCUCCGCA .(----.((((((----.(((-(....((......))....))))..((((...((((((...-.......))))))...)))-------)........)))))).). ( -29.50) >DroEre_CAF1 39746 79 + 1 UC----CGGGG--------GUUGGGGGGCUUAAAUGCAUAAGGCAAAGCAAAAAUUAUGCAUGGAAAUGUGGCAUAAAAGUU-----------------ACCUCCGCA ..----(((((--------((......((((...(((.....))))))).....((((((((......)).)))))).....-----------------))))))).. ( -20.30) >DroYak_CAF1 35733 91 + 1 AU----AGGGG----UGGAGU-UGGGGGCUUGAAUGCAUAAAGCAAAGCGAAAAUUAUGCAUG-AAAUGUGGCAUUAAAGUUG-------CAUAUCGUUGCCUCCGCA ..----.....----....((-.((((((....((((((((.((...)).....))))))))(-(.(((..((......))..-------))).))...)))))))). ( -26.90) >DroAna_CAF1 61989 96 + 1 GGGGGUGGGGGGUGGAUGUGC-CAA----CAGAAUGCUAAAAACAAAACGAAAAUUAUGCAUG-AAAAGUGGCAUACUAGUUUUUCCAUUCAUUUCAUUCUC------ ((((((((.((((((((((((-((.----....((((.....................)))).-.....)))))))........)))))))...))))))))------ ( -26.10) >consensus GG____GGGGGGU____GUGC_UGGGGGCUUAAAUGCAUAAAGCAAAGCGAAAAUUAUGCAUG_AAAUGUGGCAUAAAAGUUG_______CAUAUCGUUGCCUCCGCA .......................((((((.....(((.....))).........((((((((......)).))))))......................))))))... (-11.48 = -13.02 + 1.54)
Location | 3,527,704 – 3,527,799 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 72.86 |
Mean single sequence MFE | -17.45 |
Consensus MFE | -8.98 |
Energy contribution | -9.90 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.14 |
Mean z-score | -1.66 |
Structure conservation index | 0.51 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700801 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3527704 95 - 22224390 UGCGGAGGCAACGAUAUG-------CAACUUUUAUGCCACAUUU-CAUGCAUAAUUUUCGCUUUGCUUUAUGCAUUUAAGCCCCCA-GCACCACCACCCCCU----CC ...(((((........((-------(.....((((((.......-...)))))).....(((((((.....)))...)))).....-))).........)))----)) ( -18.53) >DroSec_CAF1 35959 89 - 1 UGCGGAGGCAACGAUAUG-------CAACUUUUAUGCCACAUUU-CAUGCAUAAUUUUCGCUUUGCU-UAUGCAUUUAAGCCCCCA-GCAC----ACCUCCC-----C ...(((((......((((-------((......(((...)))..-..))))))......(((..(((-((......)))))....)-))..----.))))).-----. ( -19.60) >DroSim_CAF1 37184 91 - 1 UGCGGAGGCAACGAUAUG-------CAACUUUUAUGCCACAUUU-CAUGCAUAAUUUUCGCUUUGCUUUAUGCAUUUAAGCCCCCA-GCAC----ACCUCCC----CC (((((.(((........(-------(.....((((((.......-...)))))).....))..(((.....))).....))).)).-))).----.......----.. ( -18.50) >DroEre_CAF1 39746 79 - 1 UGCGGAGGU-----------------AACUUUUAUGCCACAUUUCCAUGCAUAAUUUUUGCUUUGCCUUAUGCAUUUAAGCCCCCCAAC--------CCCCG----GA ..(((.(((-----------------.....((((((...........)))))).....(((((((.....)))...))))......))--------).)))----.. ( -15.30) >DroYak_CAF1 35733 91 - 1 UGCGGAGGCAACGAUAUG-------CAACUUUAAUGCCACAUUU-CAUGCAUAAUUUUCGCUUUGCUUUAUGCAUUCAAGCCCCCA-ACUCCA----CCCCU----AU ...((((.......((((-------((.....((((...)))).-..))))))......(((((((.....)))...)))).....-.)))).----.....----.. ( -17.20) >DroAna_CAF1 61989 96 - 1 ------GAGAAUGAAAUGAAUGGAAAAACUAGUAUGCCACUUUU-CAUGCAUAAUUUUCGUUUUGUUUUUAGCAUUCUG----UUG-GCACAUCCACCCCCCACCCCC ------.((((((....(((..(((.......(((((.......-...))))).......)))..)))....)))))).----.((-(.....)))............ ( -15.54) >consensus UGCGGAGGCAACGAUAUG_______CAACUUUUAUGCCACAUUU_CAUGCAUAAUUUUCGCUUUGCUUUAUGCAUUUAAGCCCCCA_GCAC____ACCCCCC____CC ...((.(((......................((((((...........)))))).........(((.....))).....))).))....................... ( -8.98 = -9.90 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:17 2006