Locus 1183

Sequence ID X_DroMel_CAF1
Location 3,522,752 – 3,522,845
Length 93
Max. P 0.821616
window1896

overview

Window 6

Location 3,522,752 – 3,522,845
Length 93
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 83.93
Mean single sequence MFE -28.17
Consensus MFE -19.39
Energy contribution -19.95
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -3.21
Structure conservation index 0.69
SVM decision value 0.68
SVM RNA-class probability 0.821616
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3522752 93 + 22224390
-----AGAGGGCUCUCCCUCGUUUGCGUGGCAGCUUUUGG-UUUGGCACAAGAAAAAAAGGCAAACAAACUAAAGCUGACACGUGAGCUUAGCAAAGAG
-----.(((((....)))))(((..((((.(((((((.((-((((....................))))))))))))).))))..)))........... ( -34.75)
>DroSec_CAF1 31091 89 + 1
-----AGAGGGAGA-GGGUCGUUUGCGUGGCAGCUUUUGG-UUUGGCACAAGAA---AAGGCAAACAAACUAAAGCUGACACGUGAGCUUAGCAAAGAG
-----.........-.....(((..((((.(((((((.((-((((.........---........))))))))))))).))))..)))........... ( -27.03)
>DroSim_CAF1 32315 89 + 1
-----AGAGGGAGA-GGGUCGUUUGCGUGGCAGCUUUUGG-UUUGGCACAAGAA---AAGGCAAACAAACUAAAGCUGACACGUGAGCUUAGCAAAGAG
-----.........-.....(((..((((.(((((((.((-((((.........---........))))))))))))).))))..)))........... ( -27.03)
>DroEre_CAF1 34743 89 + 1
-----AGAGGGAGA-G-CUAGUUUGCGUGGCAGCUUUUGGAUUUGCCAAAAGGA---AACGCAAACAAACUAAAGCUGACACGUGAGCUUAGCAAAGAG
-----.........-(-((((((..((((.(((((((.((.((((......(..---..).....))))))))))))).))))..))).))))...... ( -31.20)
>DroYak_CAF1 30079 89 + 1
-----AGAGGGAGA-G-GUCGUUUGCGUGGCAGCUUUUAGCUUUGCCAAAAGAA---AAGGCAAACAAACCGAAGCUGACACGUGAGCUUAGCAAAGAG
-----.........-.-...(((..((((.(((((((....((((((.......---..))))))......))))))).))))..)))........... ( -27.50)
>DroAna_CAF1 53047 86 + 1
AGAAUUGGGAGAGA-GAGUCGUUUGCGUGGCAGCUUU-----UUGGCAA----A---AAAGCAAACAAAGUCAUUCUGACACGUGAGCUUACCAAAGAG
....((((..((..-...))(((..(((....(((((-----((....)----)---))))).......(((.....))))))..)))...)))).... ( -21.50)
>consensus
_____AGAGGGAGA_G_GUCGUUUGCGUGGCAGCUUUUGG_UUUGGCAAAAGAA___AAGGCAAACAAACUAAAGCUGACACGUGAGCUUAGCAAAGAG
....................(((..((((.(((((((....((((....................))))..))))))).))))..)))........... (-19.39 = -19.95 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:15 2006