Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,519,349 – 3,519,445 |
Length | 96 |
Max. P | 0.985133 |
Location | 3,519,349 – 3,519,445 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 84.39 |
Mean single sequence MFE | -23.10 |
Consensus MFE | -16.62 |
Energy contribution | -16.38 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.82 |
Structure conservation index | 0.72 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706021 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3519349 96 + 22224390 UGAUAAAUACAAUUGCGUUUGCUUGUUUGUGUUUCGACUU-UUUUCUUGGGUUUUGUCAACGCGACUUGGCUCACGUUGGCAAAACAAAGUGCAAAA---- ....((((((((..((....))....))))))))......-....(((..((((((((((((.((......)).)))))))))))).))).......---- ( -24.50) >DroSec_CAF1 27713 96 + 1 UGAUAAAUAAAAUUGCGUUUGUGCUUUUGUGCUUCGACUU-UUUUCUUGGCUUUUGUCAACGCGACUUGGCUCUCGUUGACAAAACAAAGUGCAAAA---- .................((((..((((.(((((..((...-...))..))).((((((((((.((......)).))))))))))))))))..)))).---- ( -26.10) >DroSim_CAF1 28145 94 + 1 UGAUAAAUAAAAUUGCGUUU--GCUUUUGUGCUUCGACUU-UUUUCUUGGCUUUUGUCAACGCGACUUGGCUCACGUUGACAAAACAAAGUGCAAAA---- .................(((--(((((((((((..((...-...))..))).((((((((((.((......)).)))))))))))))))).))))).---- ( -25.60) >DroEre_CAF1 31535 89 + 1 UGAUA----AAAUUGCGC--------UUGUGUUUCAACUCUUUUUCUUUGAUUUUGUGAACGCGACUUGGCUCACGUUGACAAAACAAAGUGCAAAACAAA .....----...((((((--------((((......))..........((.((((((.((((.((......)).)))).))))))))))))))))...... ( -20.70) >DroYak_CAF1 26561 101 + 1 UGAUAAAUAAAAUUGCGUUUGCUUGUUUGUGUUUCAACUUUUUUUCUUUGCUUUUGUCAACGCGACUUGGCUCACAUUGGCAAAACAAGGUGCAAAACAAA (((...(((((...((....))...)))))...)))..((((...(((((.(((((((((.(.((......)).).))))))))))))))...)))).... ( -18.60) >consensus UGAUAAAUAAAAUUGCGUUUG_GCGUUUGUGUUUCGACUU_UUUUCUUGGCUUUUGUCAACGCGACUUGGCUCACGUUGACAAAACAAAGUGCAAAA____ ............((((..........(((.....)))........(((.(.(((((((((((.((......)).)))))))))))).))).))))...... (-16.62 = -16.38 + -0.24)
Location | 3,519,349 – 3,519,445 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 84.39 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -17.88 |
Energy contribution | -18.48 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.08 |
Mean z-score | -2.56 |
Structure conservation index | 0.80 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3519349 96 - 22224390 ----UUUUGCACUUUGUUUUGCCAACGUGAGCCAAGUCGCGUUGACAAAACCCAAGAAAA-AAGUCGAAACACAAACAAGCAAACGCAAUUGUAUUUAUCA ----(((((.(((((((((((.((((((((......)))))))).))))))........)-))))))))).....((((((....))..))))........ ( -21.00) >DroSec_CAF1 27713 96 - 1 ----UUUUGCACUUUGUUUUGUCAACGAGAGCCAAGUCGCGUUGACAAAAGCCAAGAAAA-AAGUCGAAGCACAAAAGCACAAACGCAAUUUUAUUUAUCA ----..((((.(((.((((((((((((.((......)).))))))).))))).)))....-........((......))......))))............ ( -21.70) >DroSim_CAF1 28145 94 - 1 ----UUUUGCACUUUGUUUUGUCAACGUGAGCCAAGUCGCGUUGACAAAAGCCAAGAAAA-AAGUCGAAGCACAAAAGC--AAACGCAAUUUUAUUUAUCA ----..((((.(((.(((((((((((((((......)))))))))).))))).)))....-........((......))--....))))............ ( -25.50) >DroEre_CAF1 31535 89 - 1 UUUGUUUUGCACUUUGUUUUGUCAACGUGAGCCAAGUCGCGUUCACAAAAUCAAAGAAAAAGAGUUGAAACACAA--------GCGCAAUUU----UAUCA ......((((.(((((((((((.(((((((......))))))).)))))).))))).......(((........)--------))))))...----..... ( -22.80) >DroYak_CAF1 26561 101 - 1 UUUGUUUUGCACCUUGUUUUGCCAAUGUGAGCCAAGUCGCGUUGACAAAAGCAAAGAAAAAAAGUUGAAACACAAACAAGCAAACGCAAUUUUAUUUAUCA .(((((((((.(.(((((((..((((((((......))))))))...))))))).).......(((........)))..))))).))))............ ( -21.40) >consensus ____UUUUGCACUUUGUUUUGUCAACGUGAGCCAAGUCGCGUUGACAAAAGCCAAGAAAA_AAGUCGAAACACAAAAAA_CAAACGCAAUUUUAUUUAUCA ......((((.(((.(((((((((((((((......)))))))))))))).).))).......((....))..............))))............ (-17.88 = -18.48 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:11 2006