Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 3,517,408 – 3,517,501 |
Length | 93 |
Max. P | 0.632895 |
Location | 3,517,408 – 3,517,501 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 75.11 |
Mean single sequence MFE | -21.26 |
Consensus MFE | -2.78 |
Energy contribution | -2.62 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.50 |
Structure conservation index | 0.13 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3517408 93 - 22224390 CAACGGACACAGUGU-UG---GUAUUUCUCGUGCUGGUAUUUAAAUACUAGCGACAAUGAGAGGUAAAAUACCACAUGUAAUGGUCACACUUUCGCC .....(((...((((-.(---(((((((((((((((((((....))))))))....)))))).....))))))))))......)))........... ( -25.20) >DroSec_CAF1 25686 94 - 1 CAACGCACUCGAUGUUUG---GUAUUUCUCGUGCCGGUAUUUAAAUACUAGCGACAAUGCGUGGGAAAAUACCACAUGUAAUGGUCACACUUUCGCC ....((...........(---((((.....)))))(((((....))))).))(((..((((((((......)).))))))...)))........... ( -20.60) >DroSim_CAF1 26135 94 - 1 CAACGCACUCGAUGUUUG---GUAUUUCUCGUGCCGGUAUUUAAAUACUAGCGACAAUGCGUGGGAAAAUACCACAUGUAAUGGUCACACUUUCGCC ....((...........(---((((.....)))))(((((....))))).))(((..((((((((......)).))))))...)))........... ( -20.60) >DroEre_CAF1 29648 80 - 1 CAACGCACACA-UUU-UGUGUGUAUUU---------------UAAUACUAGUGAGAUUGUGCUGGAAAAUACCACUUUAAGUGGGCACACUUUCGCC ....((((((.-...-.))))))....---------------........((((((.((((((....)...((((.....))))))))).)))))). ( -24.90) >DroYak_CAF1 24592 80 - 1 CAACGCACACA-UGU-UG---GCAUUUC------------AUAAAUACUAGUAACAGUGUGAAAGAAAAAACCAUAUUAAAUGGGCACACUUUUGCC (((((......-)))-))---.......------------..........((((.((((((..........((((.....)))).)))))).)))). ( -15.00) >consensus CAACGCACACA_UGU_UG___GUAUUUCUCGUGC_GGUAUUUAAAUACUAGCGACAAUGCGAGGGAAAAUACCACAUGUAAUGGUCACACUUUCGCC ..................................................((((.(.((.(.........((((.......))))).)).).)))). ( -2.78 = -2.62 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:09 2006