Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 478,292 – 478,394 |
Length | 102 |
Max. P | 0.500000 |
Location | 478,292 – 478,394 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 84.94 |
Mean single sequence MFE | -35.10 |
Consensus MFE | -21.29 |
Energy contribution | -23.35 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.15 |
Mean z-score | -1.83 |
Structure conservation index | 0.61 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 478292 102 + 22224390 AAAGCGCGAGCGACUUGAAUUCCCGCUGACCGCCUCAGACGGUAGCCGAAUUUGGCGGCAAGCUAGCCAAGGUGGCAGCACUGAAAUGGUCACAGAAC----GAAA ...((....))((((....(((..((((.((((((.........((((....))))(((......))).))))))))))...)))..)))).......----.... ( -35.00) >DroSec_CAF1 9915 102 + 1 AAAGCGGGAGCGACUUGAAUUCCCGCUGACCGCCUCAGACGCUAACCGAAUUUGGCGGCAAGCUAGCCAAGGUGGCAGCACUGAGAUGGACAGAGAAC----GAAA ..((((((((.........))))))))..(((.(((((.((((((......))))))....(((.(((.....)))))).))))).))).........----.... ( -37.60) >DroSim_CAF1 10336 102 + 1 AAAGAGGGAGCGACUUGGAUUCCCGCUGACCGCCCCAGACGCUAACCGAAUUUGGCGGCAAGCUAGCCAAGGUGGCAGCACUGAGAUGGACAGAGAAC----GAAA .....((((((......).)))))((((.(((((......(((((......)))))(((......)))..))))))))).(((.......))).....----.... ( -32.50) >DroEre_CAF1 10290 106 + 1 AAAGCGCGAGCGACACGGACUCCUGCCGACAGCGUCGGACAGUAUCCGAAUCUGGCGGGAAACUAGCCACAGUGGCAGCACUGAAGUGGACACAGAACAGAAGAUA ...((....))....((((...((((((((...))))).)))..)))).(((((((((....)).))).(((((....)))))..................)))). ( -35.30) >consensus AAAGCGCGAGCGACUUGAAUUCCCGCUGACCGCCUCAGACGCUAACCGAAUUUGGCGGCAAGCUAGCCAAGGUGGCAGCACUGAAAUGGACACAGAAC____GAAA ..((((((((.........))))))))..(((.(((((......((((.......))))..(((.(((.....)))))).))))).)))................. (-21.29 = -23.35 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:43 2006